Gene annotation
Transcriptome id Sobic.004G181800.11,Sobic.004G181800.5,Sobic.004G181800.4,Sobic.004G181800.8,Sobic.004G181800.9,Sobic.004G181800.10,Sobic.004G181800.7,Sobic.004G181800.1,Sobic.004G181800.12,Sobic.004G181800.6
Synonym Sb04g023130
Functional annotation -
UniProt C5XUY8
Pfam -
Panther DB PTHR38928:SF2 PTHR38928 PTHR38928 PTHR38928:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a020724
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
2 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
3 Sobic.006G054900 DUF538 domain containing protein, putative, expressed -
4 Sobic.003G049300 expressed protein -
5 Sobic.010G176700 receptor-like protein kinase precursor, putative, expressed -
6 Sobic.006G012900 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
7 Sobic.002G200300 no apical meristem protein, putative, expressed -
8 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
9 Sobic.009G158700 - -
10 Sobic.005G195200 expressed protein -
11 Sobic.004G167800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pectinesterase inhibitor domain containing protein, putative, expressed -
12 Sobic.009G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
13 Sobic.001G243600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.010G071900 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
15 Sobic.009G224800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
16 Sobic.010G138400 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
18 Sobic.001G341550 - -
19 Sobic.002G249000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
20 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic004G181800 Sobic004G181800 Sobic001G100700 Sobic001G100700 Sobic004G181800--Sobic001G100700 Sobic005G213200 Sobic005G213200 Sobic004G181800--Sobic005G213200 Sobic006G054900 Sobic006G054900 Sobic004G181800--Sobic006G054900 Sobic003G049300 Sobic003G049300 Sobic004G181800--Sobic003G049300 Sobic010G176700 Sobic010G176700 Sobic004G181800--Sobic010G176700 Sobic006G012900 Sobic006G012900 Sobic004G181800--Sobic006G012900 Sobic002G200300 Sobic002G200300 Sobic004G181800--Sobic002G200300 Sobic001G243500 Sobic001G243500 Sobic004G181800--Sobic001G243500 Sobic009G158700 Sobic009G158700 Sobic004G181800--Sobic009G158700 Sobic001G100700--Sobic005G213200 Sobic001G100700--Sobic001G243500 Sobic001G444400 Sobic001G444400 Sobic001G100700--Sobic001G444400 Sobic001G243600 Sobic001G243600 Sobic001G100700--Sobic001G243600 Sobic009G106800 Sobic009G106800 Sobic001G100700--Sobic009G106800 Sobic009G120000 Sobic009G120000 Sobic001G100700--Sobic009G120000 Sobic004G273400 Sobic004G273400 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic005G213200--Sobic001G100700 Sobic005G213200--Sobic001G243600 Sobic005G213200--Sobic001G243500 Sobic005G213200--Sobic009G120000 Sobic005G213200--Sobic009G106800 Sobic005G213200--Sobic001G444400 Sobic005G213200--Sobic004G273400 Sobic010G071900 Sobic010G071900 Sobic005G213200--Sobic010G071900 Sobic005G213200--Sobic010G209900 Sobic006G054900--Sobic001G100700 Sobic006G054900--Sobic004G181800 Sobic006G054900--Sobic010G176700 Sobic010G117200 Sobic010G117200 Sobic006G054900--Sobic010G117200 Sobic003G278000 Sobic003G278000 Sobic006G054900--Sobic003G278000 Sobic001G196300 Sobic001G196300 Sobic006G054900--Sobic001G196300 Sobic001G184000 Sobic001G184000 Sobic006G054900--Sobic001G184000 Sobic006G054900--Sobic005G213200 Sobic003G075500 Sobic003G075500 Sobic006G054900--Sobic003G075500 Sobic002G242500 Sobic002G242500 Sobic003G049300--Sobic002G242500 Sobic004G145200 Sobic004G145200 Sobic003G049300--Sobic004G145200 Sobic010G225100 Sobic010G225100 Sobic003G049300--Sobic010G225100 Sobic006G076201 Sobic006G076201 Sobic003G049300--Sobic006G076201 Sobic002G210901 Sobic002G210901 Sobic003G049300--Sobic002G210901 Sobic009G149400 Sobic009G149400 Sobic003G049300--Sobic009G149400 Sobic010G228000 Sobic010G228000 Sobic003G049300--Sobic010G228000 Sobic009G155200 Sobic009G155200 Sobic003G049300--Sobic009G155200 Sobic010G236500 Sobic010G236500 Sobic003G049300--Sobic010G236500 Sobic003G061400 Sobic003G061400 Sobic010G176700--Sobic003G061400 Sobic002G249000 Sobic002G249000 Sobic010G176700--Sobic002G249000 Sobic009G003900 Sobic009G003900 Sobic010G176700--Sobic009G003900 Sobic010G176700--Sobic001G184000 Sobic002G057300 Sobic002G057300 Sobic010G176700--Sobic002G057300 Sobic003G442500 Sobic003G442500 Sobic010G176700--Sobic003G442500 Sobic004G185900 Sobic004G185900 Sobic010G176700--Sobic004G185900 Sobic001G010400 Sobic001G010400 Sobic010G176700--Sobic001G010400 Sobic004G277000 Sobic004G277000 Sobic010G176700--Sobic004G277000 Sobic006G012900--Sobic005G213200 Sobic002G180600 Sobic002G180600 Sobic006G012900--Sobic002G180600 Sobic004G054300 Sobic004G054300 Sobic006G012900--Sobic004G054300 Sobic006G012900--Sobic010G071900 Sobic009G117900 Sobic009G117900 Sobic006G012900--Sobic009G117900 Sobic010G151000 Sobic010G151000 Sobic006G012900--Sobic010G151000 Sobic006G012900--Sobic001G100700 Sobic010G046300 Sobic010G046300 Sobic006G012900--Sobic010G046300 Sobic010G253800 Sobic010G253800 Sobic006G012900--Sobic010G253800 Sobic001G341550 Sobic001G341550 Sobic002G200300--Sobic001G341550 Sobic002G200300--Sobic001G243600 Sobic002G200300--Sobic001G243500 Sobic002G200300--Sobic005G213200 Sobic009G057000 Sobic009G057000 Sobic002G200300--Sobic009G057000 Sobic002G200300--Sobic001G100700 Sobic002G200300--Sobic004G273400 Sobic002G128300 Sobic002G128300 Sobic002G200300--Sobic002G128300 Sobic002G200300--Sobic001G444400 Sobic001G243500--Sobic004G273400 Sobic001G243500--Sobic001G243600 Sobic001G243500--Sobic001G100700 Sobic001G243500--Sobic005G213200 Sobic002G346100 Sobic002G346100 Sobic001G243500--Sobic002G346100 Sobic001G243500--Sobic009G106800 Sobic001G243400 Sobic001G243400 Sobic001G243500--Sobic001G243400 Sobic001G243500--Sobic002G200300 Sobic001G331301 Sobic001G331301 Sobic001G243500--Sobic001G331301 Sobic009G158700--Sobic001G243500 Sobic009G158700--Sobic009G106800 Sobic008G044500 Sobic008G044500 Sobic009G158700--Sobic008G044500 Sobic009G158700--Sobic005G213200 Sobic009G158700--Sobic001G243600 Sobic009G158700--Sobic001G100700 Sobic009G158700--Sobic004G273400 Sobic006G277550 Sobic006G277550 Sobic009G158700--Sobic006G277550 Sobic001G335600 Sobic001G335600 Sobic009G158700--Sobic001G335600
Octagon: transcription factors


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