Gene annotation
Transcriptome id Sobic.004G184200.4,Sobic.004G184200.2,Sobic.004G184200.1,Sobic.004G184200.5
Synonym LRL3, Sb04g023320
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PTF1, putative, expressed
UniProt A0A194YRK2 , A0A194YQI6
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G58010 : LJRHL1-like 3
RAP-DB (Rice) LOC_Os02g35660.1 : PTF1, putative, expressed
MaizeGDB (Corn) Zm00025a020740
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G184200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G037600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
2 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
3 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
4 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
5 Sobic.004G065800 - -
6 Sobic.001G524000 CBS domain containing protein, expressed K16302: metal transporter CNNM
7 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
8 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
9 Sobic.010G207400 protein kinase domain containing protein, expressed -
10 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
12 Sobic.005G050600 protein of unknown function domain containing protein, expressed -
13 Sobic.006G156801 - K15203: general transcription factor 3C polypeptide 6
14 Sobic.001G319800 cytochrome P450, putative, expressed -
15 Sobic.003G062101 - -
16 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.007G091200 wax synthase isoform 1, putative, expressed -
18 Sobic.003G331100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
20 Sobic.003G055200 expressed protein -


Gene co-expression network
sample Sobic004G184200 Sobic004G184200 Sobic003G037600 Sobic003G037600 Sobic004G184200--Sobic003G037600 Sobic009G132600 Sobic009G132600 Sobic004G184200--Sobic009G132600 Sobic008G160500 Sobic008G160500 Sobic004G184200--Sobic008G160500 Sobic010G273800 Sobic010G273800 Sobic004G184200--Sobic010G273800 Sobic004G065800 Sobic004G065800 Sobic004G184200--Sobic004G065800 Sobic001G524000 Sobic001G524000 Sobic004G184200--Sobic001G524000 Sobic004G262100 Sobic004G262100 Sobic004G184200--Sobic004G262100 Sobic002G403200 Sobic002G403200 Sobic004G184200--Sobic002G403200 Sobic010G207400 Sobic010G207400 Sobic004G184200--Sobic010G207400 Sobic009G132650 Sobic009G132650 Sobic003G037600--Sobic009G132650 Sobic005G176875 Sobic005G176875 Sobic003G037600--Sobic005G176875 Sobic010G084800 Sobic010G084800 Sobic003G037600--Sobic010G084800 Sobic002G286800 Sobic002G286800 Sobic003G037600--Sobic002G286800 Sobic010G047300 Sobic010G047300 Sobic003G037600--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic003G037600--Sobic007G041200 Sobic004G071100 Sobic004G071100 Sobic003G037600--Sobic004G071100 Sobic009G060300 Sobic009G060300 Sobic003G037600--Sobic009G060300 Sobic002G273000 Sobic002G273000 Sobic003G037600--Sobic002G273000 Sobic009G132600--Sobic010G207400 Sobic007G091200 Sobic007G091200 Sobic009G132600--Sobic007G091200 Sobic009G253800 Sobic009G253800 Sobic009G132600--Sobic009G253800 Sobic001G278700 Sobic001G278700 Sobic009G132600--Sobic001G278700 Sobic009G132600--Sobic010G273800 Sobic001G196700 Sobic001G196700 Sobic009G132600--Sobic001G196700 Sobic009G033500 Sobic009G033500 Sobic009G132600--Sobic009G033500 Sobic003G207600 Sobic003G207600 Sobic009G132600--Sobic003G207600 Sobic009G007500 Sobic009G007500 Sobic009G132600--Sobic009G007500 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic008G160500--Sobic002G403200 Sobic003G004500 Sobic003G004500 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic004G294100 Sobic004G294100 Sobic010G273800--Sobic004G294100 Sobic001G194100 Sobic001G194100 Sobic004G065800--Sobic001G194100 Sobic004G071050 Sobic004G071050 Sobic004G065800--Sobic004G071050 Sobic004G339900 Sobic004G339900 Sobic004G065800--Sobic004G339900 Sobic003G062101 Sobic003G062101 Sobic004G065800--Sobic003G062101 Sobic004G065800--Sobic009G033500 Sobic002G420400 Sobic002G420400 Sobic004G065800--Sobic002G420400 Sobic004G065800--Sobic007G041200 Sobic001G485200 Sobic001G485200 Sobic004G065800--Sobic001G485200 Sobic010G106601 Sobic010G106601 Sobic004G065800--Sobic010G106601 Sobic009G166600 Sobic009G166600 Sobic001G524000--Sobic009G166600 Sobic005G197100 Sobic005G197100 Sobic001G524000--Sobic005G197100 Sobic004G160700 Sobic004G160700 Sobic001G524000--Sobic004G160700 Sobic003G331100 Sobic003G331100 Sobic001G524000--Sobic003G331100 Sobic006G141300 Sobic006G141300 Sobic001G524000--Sobic006G141300 Sobic006G063700 Sobic006G063700 Sobic001G524000--Sobic006G063700 Sobic003G304200 Sobic003G304200 Sobic001G524000--Sobic003G304200 Sobic003G425600 Sobic003G425600 Sobic001G524000--Sobic003G425600 Sobic003G284700 Sobic003G284700 Sobic001G524000--Sobic003G284700 Sobic004G262100--Sobic002G015800 Sobic004G262100--Sobic003G092600 Sobic004G262100--Sobic001G324800 Sobic001G509100 Sobic001G509100 Sobic004G262100--Sobic001G509100 Sobic002G360900 Sobic002G360900 Sobic004G262100--Sobic002G360900 Sobic001G261529 Sobic001G261529 Sobic004G262100--Sobic001G261529 Sobic005G083280 Sobic005G083280 Sobic004G262100--Sobic005G083280 Sobic003G101200 Sobic003G101200 Sobic004G262100--Sobic003G101200 Sobic010G022600 Sobic010G022600 Sobic004G262100--Sobic010G022600 Sobic003G192000 Sobic003G192000 Sobic002G403200--Sobic003G192000 Sobic002G403200--Sobic010G207400 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic002G403200--Sobic001G033400 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600
Octagon: transcription factors


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