Gene annotation
Transcriptome id Sobic.004G188000.2
Synonym Sb04g023645
Functional annotation histone H3, putative, expressed
UniProt A0A194YQQ1
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT4G40030 : Histone superfamily protein
RAP-DB (Rice) LOC_Os06g04030.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a020776 , Zm00025a011166 , Zm00025a002729
Brachypodium KQJ95915 , KQJ99836
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU2Hr1G090210.1 , HORVU2Hr1G090210.2 , HORVU2Hr1G090210.3 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.1 , HORVU2Hr1G079560.7 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4
Wheat TraesCS2D02G316700 , TraesCS1A02G421300 , TraesCS2B02G337200 , TraesCS3A02G484500 , TraesCS2A02G318900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G164950 - -
2 Sobic.004G213900 trafficking protein particle complex subunit, putative, expressed -
3 Sobic.002G103100 - -
4 Sobic.004G185400 - -
5 Sobic.002G237900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLE6 - cellulose synthase-like family E, expressed -
6 Sobic.002G173700 expressed protein -
7 Sobic.004G122300 - -
8 Sobic.009G098200 gibberellin receptor GID1L2, putative, expressed -
9 Sobic.002G022100 OsFBX212 - F-box domain containing protein, expressed -
10 Sobic.001G317300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.003G434900 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
12 Sobic.003G317500 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
13 Sobic.008G089800 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
14 Sobic.007G198400 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.001G333300 circadian clock coupling factor-related, putative, expressed -
16 Sobic.007G141380 - -
17 Sobic.007G061100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor, putative, expressed K14431: transcription factor TGA
18 Sobic.007G001200 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
19 Sobic.004G127400 CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.003G418733 - -


Gene co-expression network
sample Sobic004G188000 Sobic004G188000 Sobic003G164950 Sobic003G164950 Sobic004G188000--Sobic003G164950 Sobic004G213900 Sobic004G213900 Sobic004G188000--Sobic004G213900 Sobic002G103100 Sobic002G103100 Sobic004G188000--Sobic002G103100 Sobic004G185400 Sobic004G185400 Sobic004G188000--Sobic004G185400 Sobic002G237900 Sobic002G237900 Sobic004G188000--Sobic002G237900 Sobic002G173700 Sobic002G173700 Sobic004G188000--Sobic002G173700 Sobic004G122300 Sobic004G122300 Sobic004G188000--Sobic004G122300 Sobic009G098200 Sobic009G098200 Sobic004G188000--Sobic009G098200 Sobic002G022100 Sobic002G022100 Sobic004G188000--Sobic002G022100 Sobic003G164950--Sobic002G103100 Sobic008G089800 Sobic008G089800 Sobic003G164950--Sobic008G089800 Sobic006G056800 Sobic006G056800 Sobic003G164950--Sobic006G056800 Sobic003G164950--Sobic004G188000 Sobic003G164950--Sobic002G022100 Sobic001G284475 Sobic001G284475 Sobic003G164950--Sobic001G284475 Sobic003G418733 Sobic003G418733 Sobic003G164950--Sobic003G418733 Sobic006G061900 Sobic006G061900 Sobic003G164950--Sobic006G061900 Sobic002G118101 Sobic002G118101 Sobic003G164950--Sobic002G118101 Sobic004G213900--Sobic004G188000 Sobic009G121400 Sobic009G121400 Sobic004G213900--Sobic009G121400 Sobic010G239900 Sobic010G239900 Sobic004G213900--Sobic010G239900 Sobic007G062000 Sobic007G062000 Sobic004G213900--Sobic007G062000 Sobic008G088872 Sobic008G088872 Sobic004G213900--Sobic008G088872 Sobic003G170700 Sobic003G170700 Sobic004G213900--Sobic003G170700 Sobic004G130964 Sobic004G130964 Sobic004G213900--Sobic004G130964 Sobic010G210500 Sobic010G210500 Sobic004G213900--Sobic010G210500 Sobic001G364800 Sobic001G364800 Sobic004G213900--Sobic001G364800 Sobic002G103100--Sobic003G164950 Sobic002G103100--Sobic008G089800 Sobic007G198400 Sobic007G198400 Sobic002G103100--Sobic007G198400 Sobic002G103100--Sobic003G418733 Sobic002G103100--Sobic002G022100 Sobic002G103100--Sobic004G188000 Sobic002G103100--Sobic002G118101 Sobic007G202300 Sobic007G202300 Sobic002G103100--Sobic007G202300 Sobic002G408100 Sobic002G408100 Sobic002G103100--Sobic002G408100 Sobic004G185400--Sobic004G188000 Sobic002G190200 Sobic002G190200 Sobic004G185400--Sobic002G190200 Sobic004G185400--Sobic004G122300 Sobic004G185400--Sobic002G103100 Sobic001G317300 Sobic001G317300 Sobic004G185400--Sobic001G317300 Sobic003G170400 Sobic003G170400 Sobic004G185400--Sobic003G170400 Sobic007G043100 Sobic007G043100 Sobic004G185400--Sobic007G043100 Sobic002G071350 Sobic002G071350 Sobic004G185400--Sobic002G071350 Sobic002G237900--Sobic002G408100 Sobic009G140000 Sobic009G140000 Sobic002G237900--Sobic009G140000 Sobic002G403600 Sobic002G403600 Sobic002G237900--Sobic002G403600 Sobic007G141380 Sobic007G141380 Sobic002G237900--Sobic007G141380 Sobic001G531500 Sobic001G531500 Sobic002G237900--Sobic001G531500 Sobic003G426700 Sobic003G426700 Sobic002G237900--Sobic003G426700 Sobic004G027600 Sobic004G027600 Sobic002G237900--Sobic004G027600 Sobic004G317500 Sobic004G317500 Sobic002G237900--Sobic004G317500 Sobic004G189800 Sobic004G189800 Sobic002G237900--Sobic004G189800 Sobic004G133900 Sobic004G133900 Sobic002G173700--Sobic004G133900 Sobic004G149600 Sobic004G149600 Sobic002G173700--Sobic004G149600 Sobic002G173700--Sobic002G103100 Sobic002G173700--Sobic004G188000 Sobic010G119500 Sobic010G119500 Sobic002G173700--Sobic010G119500 Sobic003G357400 Sobic003G357400 Sobic002G173700--Sobic003G357400 Sobic003G261733 Sobic003G261733 Sobic002G173700--Sobic003G261733 Sobic007G130200 Sobic007G130200 Sobic002G173700--Sobic007G130200 Sobic010G179750 Sobic010G179750 Sobic002G173700--Sobic010G179750 Sobic004G122300--Sobic003G170400 Sobic002G148000 Sobic002G148000 Sobic004G122300--Sobic002G148000 Sobic003G388500 Sobic003G388500 Sobic004G122300--Sobic003G388500 Sobic004G122300--Sobic004G188000 Sobic004G122300--Sobic004G185400 Sobic003G285300 Sobic003G285300 Sobic004G122300--Sobic003G285300 Sobic006G007800 Sobic006G007800 Sobic004G122300--Sobic006G007800 Sobic004G122100 Sobic004G122100 Sobic004G122300--Sobic004G122100 Sobic009G012900 Sobic009G012900 Sobic004G122300--Sobic009G012900 Sobic001G459600 Sobic001G459600 Sobic009G098200--Sobic001G459600 Sobic003G317500 Sobic003G317500 Sobic009G098200--Sobic003G317500 Sobic002G418800 Sobic002G418800 Sobic009G098200--Sobic002G418800 Sobic004G175400 Sobic004G175400 Sobic009G098200--Sobic004G175400 Sobic001G000501 Sobic001G000501 Sobic009G098200--Sobic001G000501 Sobic001G517800 Sobic001G517800 Sobic009G098200--Sobic001G517800 Sobic001G000700 Sobic001G000700 Sobic009G098200--Sobic001G000700 Sobic010G057633 Sobic010G057633 Sobic009G098200--Sobic010G057633 Sobic009G248801 Sobic009G248801 Sobic009G098200--Sobic009G248801 Sobic002G048900 Sobic002G048900 Sobic002G022100--Sobic002G048900 Sobic002G022100--Sobic007G141380 Sobic002G016100 Sobic002G016100 Sobic002G022100--Sobic002G016100 Sobic002G022100--Sobic002G103100 Sobic002G022100--Sobic003G164950 Sobic002G022100--Sobic007G198400 Sobic004G230700 Sobic004G230700 Sobic002G022100--Sobic004G230700 Sobic009G185100 Sobic009G185100 Sobic002G022100--Sobic009G185100 Sobic009G260350 Sobic009G260350 Sobic002G022100--Sobic009G260350
Octagon: transcription factors


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