Gene annotation
Transcriptome id Sobic.007G061100.2,Sobic.007G061100.3
Synonym TGA3, Sb07g004900
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
transcription factor, putative, expressed
UniProt A0A1Z5R886
Pfam PF00170 PF14144
Panther DB PTHR22952 PTHR22952:SF160
NCBI CDD -
KEGG Orthology K14431; transcription factor TGA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G77920 : bZIP transcription factor family protein
RAP-DB (Rice) LOC_Os08g07970.1 : transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a054662 , Zm00025a057149
Brachypodium KQJ84872 , KQJ84861
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G061100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G090403 - -
2 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
3 Sobic.001G062900 peptidase, putative, expressed K01301: N-acetylated-alpha-linked acidic dipeptidase
4 Sobic.003G160100 - -
5 Sobic.001G413000 ABC transporter family protein, putative, expressed -
6 Sobic.004G086150 - -
7 Sobic.009G248801 - -
8 Sobic.002G017500 expressed protein -
9 Sobic.006G225900 expressed protein -
10 Sobic.006G175800 acyl-CoA thioesterase 2, putative, expressed K01068: acyl-coenzyme A thioesterase 1/2/4
11 Sobic.005G068700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
12 Sobic.008G089800 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
13 Sobic.001G243200 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
14 Sobic.007G133000 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
15 Sobic.001G251800 OsFBK23 - F-box domain and kelch repeat containing protein, expressed -
16 Sobic.005G075100 rp3 protein, putative, expressed -
17 Sobic.001G133000 expressed protein -
18 Sobic.007G202300 expressed protein -
19 Sobic.004G175400 - -
20 Sobic.008G166550 - -


Gene co-expression network
sample Sobic007G061100 Sobic007G061100 Sobic007G090403 Sobic007G090403 Sobic007G061100--Sobic007G090403 Sobic002G244200 Sobic002G244200 Sobic007G061100--Sobic002G244200 Sobic001G062900 Sobic001G062900 Sobic007G061100--Sobic001G062900 Sobic003G160100 Sobic003G160100 Sobic007G061100--Sobic003G160100 Sobic001G413000 Sobic001G413000 Sobic007G061100--Sobic001G413000 Sobic004G086150 Sobic004G086150 Sobic007G061100--Sobic004G086150 Sobic009G248801 Sobic009G248801 Sobic007G061100--Sobic009G248801 Sobic002G017500 Sobic002G017500 Sobic007G061100--Sobic002G017500 Sobic006G225900 Sobic006G225900 Sobic007G061100--Sobic006G225900 Sobic005G068700 Sobic005G068700 Sobic007G090403--Sobic005G068700 Sobic007G090403--Sobic002G244200 Sobic006G219600 Sobic006G219600 Sobic007G090403--Sobic006G219600 Sobic007G090403--Sobic001G062900 Sobic005G149200 Sobic005G149200 Sobic007G090403--Sobic005G149200 Sobic001G133000 Sobic001G133000 Sobic007G090403--Sobic001G133000 Sobic009G123900 Sobic009G123900 Sobic007G090403--Sobic009G123900 Sobic006G065100 Sobic006G065100 Sobic007G090403--Sobic006G065100 Sobic009G215500 Sobic009G215500 Sobic007G090403--Sobic009G215500 Sobic002G244200--Sobic009G248801 Sobic005G095000 Sobic005G095000 Sobic002G244200--Sobic005G095000 Sobic008G166550 Sobic008G166550 Sobic002G244200--Sobic008G166550 Sobic002G244200--Sobic007G090403 Sobic007G133000 Sobic007G133000 Sobic002G244200--Sobic007G133000 Sobic002G244200--Sobic003G160100 Sobic002G244200--Sobic004G086150 Sobic007G202300 Sobic007G202300 Sobic002G244200--Sobic007G202300 Sobic003G416000 Sobic003G416000 Sobic002G244200--Sobic003G416000 Sobic001G062900--Sobic007G090403 Sobic003G342100 Sobic003G342100 Sobic001G062900--Sobic003G342100 Sobic001G062900--Sobic009G215500 Sobic001G073900 Sobic001G073900 Sobic001G062900--Sobic001G073900 Sobic001G530900 Sobic001G530900 Sobic001G062900--Sobic001G530900 Sobic001G531500 Sobic001G531500 Sobic001G062900--Sobic001G531500 Sobic003G332700 Sobic003G332700 Sobic001G062900--Sobic003G332700 Sobic001G105200 Sobic001G105200 Sobic001G062900--Sobic001G105200 Sobic005G001700 Sobic005G001700 Sobic001G062900--Sobic005G001700 Sobic003G160100--Sobic005G095000 Sobic003G160100--Sobic004G086150 Sobic004G006800 Sobic004G006800 Sobic003G160100--Sobic004G006800 Sobic003G160100--Sobic009G248801 Sobic003G160100--Sobic002G244200 Sobic002G379750 Sobic002G379750 Sobic003G160100--Sobic002G379750 Sobic003G160100--Sobic007G090403 Sobic005G133600 Sobic005G133600 Sobic003G160100--Sobic005G133600 Sobic003G160100--Sobic007G133000 Sobic002G173100 Sobic002G173100 Sobic001G413000--Sobic002G173100 Sobic006G259600 Sobic006G259600 Sobic001G413000--Sobic006G259600 Sobic001G243200 Sobic001G243200 Sobic001G413000--Sobic001G243200 Sobic001G413000--Sobic007G090403 Sobic003G080700 Sobic003G080700 Sobic001G413000--Sobic003G080700 Sobic005G179300 Sobic005G179300 Sobic001G413000--Sobic005G179300 Sobic009G082000 Sobic009G082000 Sobic001G413000--Sobic009G082000 Sobic001G413000--Sobic003G160100 Sobic009G219100 Sobic009G219100 Sobic001G413000--Sobic009G219100 Sobic004G086150--Sobic009G248801 Sobic004G086150--Sobic003G160100 Sobic004G086150--Sobic002G244200 Sobic004G086150--Sobic005G095000 Sobic002G196600 Sobic002G196600 Sobic004G086150--Sobic002G196600 Sobic004G086150--Sobic005G068700 Sobic004G086150--Sobic009G123900 Sobic004G086150--Sobic007G090403 Sobic004G175400 Sobic004G175400 Sobic004G086150--Sobic004G175400 Sobic009G248801--Sobic004G086150 Sobic009G248801--Sobic002G244200 Sobic009G248801--Sobic003G160100 Sobic009G248801--Sobic005G095000 Sobic009G248801--Sobic007G202300 Sobic009G248801--Sobic005G133600 Sobic008G101100 Sobic008G101100 Sobic009G248801--Sobic008G101100 Sobic009G248801--Sobic007G090403 Sobic009G248801--Sobic008G166550 Sobic002G017500--Sobic003G416000 Sobic002G017500--Sobic003G080700 Sobic002G017500--Sobic008G166550 Sobic002G017500--Sobic002G244200 Sobic002G017500--Sobic008G101100 Sobic002G017500--Sobic007G202300 Sobic002G017500--Sobic007G090403 Sobic002G017500--Sobic003G160100 Sobic002G017500--Sobic001G413000 Sobic003G086900 Sobic003G086900 Sobic006G225900--Sobic003G086900 Sobic004G174200 Sobic004G174200 Sobic006G225900--Sobic004G174200 Sobic001G375100 Sobic001G375100 Sobic006G225900--Sobic001G375100 Sobic004G291900 Sobic004G291900 Sobic006G225900--Sobic004G291900 Sobic009G110000 Sobic009G110000 Sobic006G225900--Sobic009G110000 Sobic001G390800 Sobic001G390800 Sobic006G225900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic006G225900--Sobic001G268200 Sobic001G016700 Sobic001G016700 Sobic006G225900--Sobic001G016700 Sobic002G411600 Sobic002G411600 Sobic006G225900--Sobic002G411600
Octagon: transcription factors


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