Gene annotation
Transcriptome id Sobic.006G225900.1,Sobic.006G225900.2
Synonym Sb06g029476
Functional annotation expressed protein
UniProt C5YGK3
Pfam PF00097 PF00271 PF00176
Panther DB PTHR10799 PTHR10799:SF729
NCBI CDD KOG1001; Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G50410 : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
RAP-DB (Rice) LOC_Os04g53720.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a013030 , Zm00025a029989 , Zm00025a057100
Brachypodium KQJ84775 , KQJ84776 , KQJ84777 , KQJ95139 , PNT61905
Barley HORVU7Hr1G067480.19 , HORVU7Hr1G067480.10 , HORVU7Hr1G067480.12 , HORVU7Hr1G067480.13 , HORVU7Hr1G067480.14 , HORVU7Hr1G067480.15 , HORVU7Hr1G067480.16 , HORVU7Hr1G067480.21 , HORVU7Hr1G067480.20 , HORVU7Hr1G067480.22 , HORVU7Hr1G067480.8 , HORVU7Hr1G067480.9 , HORVU7Hr1G067480.2 , HORVU7Hr1G067480.3 , HORVU7Hr1G067480.1 , HORVU7Hr1G067480.6 , HORVU7Hr1G067480.7 , HORVU7Hr1G067480.4 , HORVU7Hr1G067480.5
Wheat TraesCS2A02G479900 , TraesCS2A02G479900 , TraesCS2B02G504600 , TraesCS2B02G504600 , TraesCS2D02G479100 , TraesCS2D02G479100 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7A02G296900 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7B02G198800 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500 , TraesCS7D02G291500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G086900 C2 domain containing protein, putative, expressed -
2 Sobic.004G174200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12813: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
3 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
4 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
5 Sobic.009G110000 phospholipase D p1, putative, expressed -
6 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
7 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
9 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
10 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
11 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
12 Sobic.003G422500 expressed protein -
13 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
14 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
15 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G111000 peptidase, putative, expressed -
17 Sobic.001G079200 STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.005G001000 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
19 Sobic.002G276100 OsLonP4 - Putative Lon protease homologue, expressed K01338: ATP-dependent Lon protease
20 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26


Gene co-expression network
sample Sobic006G225900 Sobic006G225900 Sobic003G086900 Sobic003G086900 Sobic006G225900--Sobic003G086900 Sobic004G174200 Sobic004G174200 Sobic006G225900--Sobic004G174200 Sobic001G375100 Sobic001G375100 Sobic006G225900--Sobic001G375100 Sobic004G291900 Sobic004G291900 Sobic006G225900--Sobic004G291900 Sobic009G110000 Sobic009G110000 Sobic006G225900--Sobic009G110000 Sobic001G390800 Sobic001G390800 Sobic006G225900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic006G225900--Sobic001G268200 Sobic001G016700 Sobic001G016700 Sobic006G225900--Sobic001G016700 Sobic002G411600 Sobic002G411600 Sobic006G225900--Sobic002G411600 Sobic007G193700 Sobic007G193700 Sobic003G086900--Sobic007G193700 Sobic003G086900--Sobic006G225900 Sobic010G196500 Sobic010G196500 Sobic003G086900--Sobic010G196500 Sobic003G086900--Sobic004G174200 Sobic003G086900--Sobic001G016700 Sobic003G086900--Sobic001G390800 Sobic003G086900--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic003G086900--Sobic001G121200 Sobic003G422500 Sobic003G422500 Sobic003G086900--Sobic003G422500 Sobic004G174200--Sobic004G291900 Sobic004G174200--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic004G174200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic004G174200--Sobic010G206900 Sobic002G008900 Sobic002G008900 Sobic004G174200--Sobic002G008900 Sobic001G289800 Sobic001G289800 Sobic004G174200--Sobic001G289800 Sobic005G001000 Sobic005G001000 Sobic004G174200--Sobic005G001000 Sobic004G174200--Sobic003G422500 Sobic001G194200 Sobic001G194200 Sobic004G174200--Sobic001G194200 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic001G375100--Sobic005G001000 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G291900--Sobic004G174200 Sobic004G276400 Sobic004G276400 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G034900 Sobic004G034900 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic001G002000 Sobic001G002000 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic009G109925 Sobic009G109925 Sobic009G110000--Sobic009G109925 Sobic009G110000--Sobic004G291900 Sobic009G110000--Sobic004G174200 Sobic001G542500 Sobic001G542500 Sobic009G110000--Sobic001G542500 Sobic008G098900 Sobic008G098900 Sobic009G110000--Sobic008G098900 Sobic001G370900 Sobic001G370900 Sobic009G110000--Sobic001G370900 Sobic003G205200 Sobic003G205200 Sobic009G110000--Sobic003G205200 Sobic009G110000--Sobic001G289800 Sobic009G110000--Sobic003G086900 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic001G268200--Sobic001G390800 Sobic010G013200 Sobic010G013200 Sobic001G268200--Sobic010G013200 Sobic001G268200--Sobic010G147100 Sobic001G268200--Sobic003G313500 Sobic001G268200--Sobic001G121200 Sobic001G268200--Sobic010G139600 Sobic001G268200--Sobic001G085300 Sobic001G268200--Sobic001G194200 Sobic009G053900 Sobic009G053900 Sobic001G268200--Sobic009G053900 Sobic002G430000 Sobic002G430000 Sobic001G016700--Sobic002G430000 Sobic002G111000 Sobic002G111000 Sobic001G016700--Sobic002G111000 Sobic001G207400 Sobic001G207400 Sobic001G016700--Sobic001G207400 Sobic001G016700--Sobic010G139600 Sobic003G110000 Sobic003G110000 Sobic001G016700--Sobic003G110000 Sobic001G016700--Sobic001G390800 Sobic006G204900 Sobic006G204900 Sobic001G016700--Sobic006G204900 Sobic003G322700 Sobic003G322700 Sobic001G016700--Sobic003G322700 Sobic001G016700--Sobic003G086900 Sobic009G191000 Sobic009G191000 Sobic002G411600--Sobic009G191000 Sobic002G411600--Sobic003G422500 Sobic002G411600--Sobic010G206900 Sobic002G411600--Sobic002G008900 Sobic002G411600--Sobic004G034900 Sobic002G411600--Sobic004G174200 Sobic010G247800 Sobic010G247800 Sobic002G411600--Sobic010G247800 Sobic001G534700 Sobic001G534700 Sobic002G411600--Sobic001G534700 Sobic003G101400 Sobic003G101400 Sobic002G411600--Sobic003G101400
Octagon: transcription factors


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