Gene annotation
Transcriptome id Sobic.004G213900.2
Synonym
Functional annotation trafficking protein particle complex subunit, putative, expressed
UniProt A0A1Z5RPJ2 , C6JSP7
Pfam PF04628
Panther DB PTHR12403 PTHR12403:SF14
NCBI CDD KOG3487; TRAPP 20 K subunit
KEGG Orthology -
Gene Ontology GO:0006888; endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G80500 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os02g40000.2 : trafficking protein particle complex subunit, putative, expressed
MaizeGDB (Corn) Zm00025a015473
Brachypodium KQJ83432 , PNT69051 , PNT69052 , PNT69053 , PNT69054 , KQK00324 , KQK00325 , KQK00326 , KQK00323
Barley HORVU6Hr1G056860.11 , HORVU6Hr1G056860.10 , HORVU6Hr1G056860.13 , HORVU6Hr1G056860.15 , HORVU6Hr1G056860.14 , HORVU6Hr1G056860.16 , HORVU6Hr1G056860.5 , HORVU6Hr1G056860.4 , HORVU6Hr1G056860.7 , HORVU6Hr1G056860.6 , HORVU6Hr1G056860.1 , HORVU6Hr1G056860.3 , HORVU6Hr1G056860.2 , HORVU6Hr1G056860.9 , HORVU6Hr1G056860.8
Wheat TraesCS6B02G251500 , TraesCS6D02G204700 , TraesCS6D02G204700 , TraesCS6B02G251500 , TraesCS6A02G230300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G188000 histone H3, putative, expressed K11253: histone H3
2 Sobic.009G121400 - -
3 Sobic.010G239900 "Causal gene for dwf1-1 with poor pollen viability and dwarfed growth form, "(PubMedID : 26198258)@2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein(PubMedID : 28640841)@oxidoreductase, putative, expressed -
4 Sobic.007G062000 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
5 Sobic.008G088872 - -
6 Sobic.003G170700 expressed protein -
7 Sobic.004G130964 - -
8 Sobic.010G210500 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
9 Sobic.001G364800 Mo25, putative, expressed K08272: CAB39, calcium binding protein 39
10 Sobic.004G334300 ATMAK10, putative, expressed -
11 Sobic.007G001200 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
12 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
13 Sobic.010G218000 rabGAP/TBC domain-containing protein, putative, expressed K18469: TBC1 domain family member 5
14 Sobic.006G072601 - -
15 Sobic.004G113000 - -
16 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
17 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
18 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
19 Sobic.007G088100 phosphatidylinositol 3-kinase, root isoform, putative, expressed K00914: PIK3C3, phosphatidylinositol 3-kinase
20 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2


Gene co-expression network
sample Sobic004G213900 Sobic004G213900 Sobic004G188000 Sobic004G188000 Sobic004G213900--Sobic004G188000 Sobic009G121400 Sobic009G121400 Sobic004G213900--Sobic009G121400 Sobic010G239900 Sobic010G239900 Sobic004G213900--Sobic010G239900 Sobic007G062000 Sobic007G062000 Sobic004G213900--Sobic007G062000 Sobic008G088872 Sobic008G088872 Sobic004G213900--Sobic008G088872 Sobic003G170700 Sobic003G170700 Sobic004G213900--Sobic003G170700 Sobic004G130964 Sobic004G130964 Sobic004G213900--Sobic004G130964 Sobic010G210500 Sobic010G210500 Sobic004G213900--Sobic010G210500 Sobic001G364800 Sobic001G364800 Sobic004G213900--Sobic001G364800 Sobic003G164950 Sobic003G164950 Sobic004G188000--Sobic003G164950 Sobic004G188000--Sobic004G213900 Sobic002G103100 Sobic002G103100 Sobic004G188000--Sobic002G103100 Sobic004G185400 Sobic004G185400 Sobic004G188000--Sobic004G185400 Sobic002G237900 Sobic002G237900 Sobic004G188000--Sobic002G237900 Sobic002G173700 Sobic002G173700 Sobic004G188000--Sobic002G173700 Sobic004G122300 Sobic004G122300 Sobic004G188000--Sobic004G122300 Sobic009G098200 Sobic009G098200 Sobic004G188000--Sobic009G098200 Sobic002G022100 Sobic002G022100 Sobic004G188000--Sobic002G022100 Sobic006G072601 Sobic006G072601 Sobic009G121400--Sobic006G072601 Sobic004G113000 Sobic004G113000 Sobic009G121400--Sobic004G113000 Sobic001G333300 Sobic001G333300 Sobic009G121400--Sobic001G333300 Sobic004G143475 Sobic004G143475 Sobic009G121400--Sobic004G143475 Sobic008G105366 Sobic008G105366 Sobic009G121400--Sobic008G105366 Sobic004G334300 Sobic004G334300 Sobic009G121400--Sobic004G334300 Sobic007G010700 Sobic007G010700 Sobic009G121400--Sobic007G010700 Sobic004G253700 Sobic004G253700 Sobic009G121400--Sobic004G253700 Sobic003G416000 Sobic003G416000 Sobic009G121400--Sobic003G416000 Sobic003G264100 Sobic003G264100 Sobic010G239900--Sobic003G264100 Sobic003G433200 Sobic003G433200 Sobic010G239900--Sobic003G433200 Sobic004G244900 Sobic004G244900 Sobic010G239900--Sobic004G244900 Sobic001G457800 Sobic001G457800 Sobic010G239900--Sobic001G457800 Sobic003G119600 Sobic003G119600 Sobic010G239900--Sobic003G119600 Sobic002G325300 Sobic002G325300 Sobic010G239900--Sobic002G325300 Sobic003G311900 Sobic003G311900 Sobic010G239900--Sobic003G311900 Sobic009G201300 Sobic009G201300 Sobic010G239900--Sobic009G201300 Sobic001G333100 Sobic001G333100 Sobic010G239900--Sobic001G333100 Sobic004G054100 Sobic004G054100 Sobic007G062000--Sobic004G054100 Sobic007G062000--Sobic010G210500 Sobic009G084000 Sobic009G084000 Sobic007G062000--Sobic009G084000 Sobic003G316200 Sobic003G316200 Sobic007G062000--Sobic003G316200 Sobic003G354600 Sobic003G354600 Sobic007G062000--Sobic003G354600 Sobic002G047700 Sobic002G047700 Sobic007G062000--Sobic002G047700 Sobic006G252900 Sobic006G252900 Sobic007G062000--Sobic006G252900 Sobic007G062000--Sobic010G239900 Sobic002G305000 Sobic002G305000 Sobic007G062000--Sobic002G305000 Sobic005G162500 Sobic005G162500 Sobic008G088872--Sobic005G162500 Sobic001G370900 Sobic001G370900 Sobic008G088872--Sobic001G370900 Sobic009G131300 Sobic009G131300 Sobic008G088872--Sobic009G131300 Sobic006G184900 Sobic006G184900 Sobic008G088872--Sobic006G184900 Sobic005G062200 Sobic005G062200 Sobic008G088872--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic008G088872--Sobic001G263600 Sobic002G042600 Sobic002G042600 Sobic008G088872--Sobic002G042600 Sobic002G429300 Sobic002G429300 Sobic008G088872--Sobic002G429300 Sobic002G335600 Sobic002G335600 Sobic008G088872--Sobic002G335600 Sobic009G256400 Sobic009G256400 Sobic003G170700--Sobic009G256400 Sobic003G170700--Sobic008G088872 Sobic003G170700--Sobic001G370900 Sobic003G170700--Sobic001G457800 Sobic003G170700--Sobic005G162500 Sobic003G072200 Sobic003G072200 Sobic003G170700--Sobic003G072200 Sobic001G542400 Sobic001G542400 Sobic003G170700--Sobic001G542400 Sobic006G040500 Sobic006G040500 Sobic003G170700--Sobic006G040500 Sobic004G040500 Sobic004G040500 Sobic003G170700--Sobic004G040500 Sobic004G130964--Sobic007G010700 Sobic008G021400 Sobic008G021400 Sobic004G130964--Sobic008G021400 Sobic003G114400 Sobic003G114400 Sobic004G130964--Sobic003G114400 Sobic002G426300 Sobic002G426300 Sobic004G130964--Sobic002G426300 Sobic001G542150 Sobic001G542150 Sobic004G130964--Sobic001G542150 Sobic004G130964--Sobic008G088872 Sobic010G205600 Sobic010G205600 Sobic004G130964--Sobic010G205600 Sobic009G019800 Sobic009G019800 Sobic004G130964--Sobic009G019800 Sobic006G268600 Sobic006G268600 Sobic004G130964--Sobic006G268600 Sobic010G210500--Sobic002G325300 Sobic010G147100 Sobic010G147100 Sobic010G210500--Sobic010G147100 Sobic010G210500--Sobic003G264100 Sobic009G255700 Sobic009G255700 Sobic010G210500--Sobic009G255700 Sobic010G210500--Sobic003G354600 Sobic010G210500--Sobic003G119600 Sobic007G201500 Sobic007G201500 Sobic010G210500--Sobic007G201500 Sobic007G172200 Sobic007G172200 Sobic010G210500--Sobic007G172200 Sobic001G207000 Sobic001G207000 Sobic010G210500--Sobic001G207000 Sobic007G087000 Sobic007G087000 Sobic001G364800--Sobic007G087000 Sobic002G252400 Sobic002G252400 Sobic001G364800--Sobic002G252400 Sobic001G364800--Sobic003G316200 Sobic001G364800--Sobic003G114400 Sobic002G079000 Sobic002G079000 Sobic001G364800--Sobic002G079000 Sobic006G250800 Sobic006G250800 Sobic001G364800--Sobic006G250800 Sobic001G405600 Sobic001G405600 Sobic001G364800--Sobic001G405600 Sobic010G169900 Sobic010G169900 Sobic001G364800--Sobic010G169900 Sobic001G188400 Sobic001G188400 Sobic001G364800--Sobic001G188400
Octagon: transcription factors


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