Gene annotation
Transcriptome id Sobic.010G239900.2,Sobic.010G239900.3,Sobic.010G239900.1
Synonym GA20-oxidase;GA20-oxidase, Sb10g028050
Functional annotation "Causal gene for dwf1-1 with poor pollen viability and dwarfed growth form, " (PubMedID : 26198258)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (PubMedID : 28640841)
oxidoreductase, putative, expressed
UniProt C5Z8N4 , A0A194YL70
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF144
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G50210 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os09g07020.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a018260
Brachypodium -
Barley HORVU4Hr1G015340.2 , HORVU4Hr1G015340.1
Wheat TraesCS7A02G439900
Populus -


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cDNA sequences
Sobic.010G239900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
2 Sobic.003G433200 BAS1, putative, expressed -
3 Sobic.004G244900 expressed protein -
4 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
5 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.002G325300 acyltransferase, putative, expressed K13506: GPAT3_4, AGPAT9, glycerol-3-phosphate O-acyltransferase 3/4
7 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -
8 Sobic.009G201300 - -
9 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
10 Sobic.003G354600 csAtPR5, putative, expressed -
11 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
12 Sobic.010G210500 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
13 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
14 Sobic.007G062000 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
15 Sobic.001G439300 AGAP009131-PA, putative, expressed K18826: calmodulin-lysine N-methyltransferase
16 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
17 Sobic.003G043200 EMB2410, putative, expressed -
18 Sobic.004G001500 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
19 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
20 Sobic.009G084000 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4


Gene co-expression network
sample Sobic010G239900 Sobic010G239900 Sobic003G264100 Sobic003G264100 Sobic010G239900--Sobic003G264100 Sobic003G433200 Sobic003G433200 Sobic010G239900--Sobic003G433200 Sobic004G244900 Sobic004G244900 Sobic010G239900--Sobic004G244900 Sobic001G457800 Sobic001G457800 Sobic010G239900--Sobic001G457800 Sobic003G119600 Sobic003G119600 Sobic010G239900--Sobic003G119600 Sobic002G325300 Sobic002G325300 Sobic010G239900--Sobic002G325300 Sobic003G311900 Sobic003G311900 Sobic010G239900--Sobic003G311900 Sobic009G201300 Sobic009G201300 Sobic010G239900--Sobic009G201300 Sobic001G333100 Sobic001G333100 Sobic010G239900--Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic009G109925 Sobic009G109925 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic002G311100 Sobic002G311100 Sobic003G264100--Sobic002G311100 Sobic006G180000 Sobic006G180000 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G195000 Sobic003G195000 Sobic003G264100--Sobic003G195000 Sobic001G288700 Sobic001G288700 Sobic003G433200--Sobic001G288700 Sobic003G433200--Sobic010G239900 Sobic009G255700 Sobic009G255700 Sobic003G433200--Sobic009G255700 Sobic003G433200--Sobic004G244900 Sobic001G145000 Sobic001G145000 Sobic003G433200--Sobic001G145000 Sobic004G185800 Sobic004G185800 Sobic003G433200--Sobic004G185800 Sobic003G433200--Sobic003G119600 Sobic007G031900 Sobic007G031900 Sobic003G433200--Sobic007G031900 Sobic009G185700 Sobic009G185700 Sobic003G433200--Sobic009G185700 Sobic004G244900--Sobic001G457800 Sobic004G334300 Sobic004G334300 Sobic004G244900--Sobic004G334300 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic004G244900--Sobic009G201300 Sobic002G275700 Sobic002G275700 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic009G256400 Sobic009G256400 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic001G457800--Sobic001G370900 Sobic003G166750 Sobic003G166750 Sobic001G457800--Sobic003G166750 Sobic001G457800--Sobic003G155100 Sobic004G001500 Sobic004G001500 Sobic001G457800--Sobic004G001500 Sobic001G230000 Sobic001G230000 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic001G457800--Sobic004G334300 Sobic003G119600--Sobic009G201300 Sobic001G439300 Sobic001G439300 Sobic003G119600--Sobic001G439300 Sobic003G119600--Sobic002G325300 Sobic003G119600--Sobic004G244900 Sobic002G257750 Sobic002G257750 Sobic003G119600--Sobic002G257750 Sobic005G106600 Sobic005G106600 Sobic003G119600--Sobic005G106600 Sobic003G119600--Sobic004G356700 Sobic003G253600 Sobic003G253600 Sobic003G119600--Sobic003G253600 Sobic003G354600 Sobic003G354600 Sobic003G119600--Sobic003G354600 Sobic006G185100 Sobic006G185100 Sobic002G325300--Sobic006G185100 Sobic001G194200 Sobic001G194200 Sobic002G325300--Sobic001G194200 Sobic006G252900 Sobic006G252900 Sobic002G325300--Sobic006G252900 Sobic003G247500 Sobic003G247500 Sobic002G325300--Sobic003G247500 Sobic002G325300--Sobic003G119600 Sobic006G041600 Sobic006G041600 Sobic002G325300--Sobic006G041600 Sobic002G325300--Sobic008G001200 Sobic002G325300--Sobic004G244900 Sobic002G325300--Sobic009G256400 Sobic003G311900--Sobic004G244900 Sobic003G311900--Sobic003G264100 Sobic002G167500 Sobic002G167500 Sobic003G311900--Sobic002G167500 Sobic003G311900--Sobic001G192000 Sobic003G311900--Sobic002G275700 Sobic003G311900--Sobic004G001500 Sobic005G026000 Sobic005G026000 Sobic003G311900--Sobic005G026000 Sobic001G355800 Sobic001G355800 Sobic003G311900--Sobic001G355800 Sobic001G136800 Sobic001G136800 Sobic003G311900--Sobic001G136800 Sobic006G219600 Sobic006G219600 Sobic009G201300--Sobic006G219600 Sobic009G201300--Sobic003G155100 Sobic006G050700 Sobic006G050700 Sobic009G201300--Sobic006G050700 Sobic009G201300--Sobic003G119600 Sobic009G201300--Sobic004G244900 Sobic001G133000 Sobic001G133000 Sobic009G201300--Sobic001G133000 Sobic009G201300--Sobic008G001200 Sobic009G201300--Sobic001G457800 Sobic002G211800 Sobic002G211800 Sobic009G201300--Sobic002G211800 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G333100--Sobic001G192000 Sobic010G020400 Sobic010G020400 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500
Octagon: transcription factors


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