Gene annotation
Transcriptome id Sobic.007G001200.1
Synonym Sb07g000290, VAMP714, ATVAMP714
Functional annotation vesicle-associated membrane protein, putative, expressed
UniProt C5YLC8
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF101
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08515; vesicle-associated membrane protein 7
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G22360 : vesicle-associated membrane protein 714
RAP-DB (Rice) LOC_Os10g06540.1 : vesicle-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a033663
Brachypodium KQJ94754
Barley -
Wheat TraesCS7B02G228700 , TraesCS7A02G328000 , TraesCS7D02G324800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G001200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G333300 circadian clock coupling factor-related, putative, expressed -
2 Sobic.007G001500 nicalin, putative, expressed -
3 Sobic.003G317500 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
4 Sobic.010G147000 tesmin/TSO1-like CXC domain containing protein, expressed -
5 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
6 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
7 Sobic.006G072601 - -
8 Sobic.009G222500 expressed protein -
9 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
10 Sobic.003G063000 expressed protein -
11 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
12 Sobic.001G479100 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
13 Sobic.004G127400 CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
15 Sobic.004G038800 OsFBX188 - F-box domain containing protein, expressed -
16 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
17 Sobic.001G303100 expressed protein -
18 Sobic.001G373900 MYB family transcription factor, putative, expressed -
19 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
20 Sobic.004G334300 ATMAK10, putative, expressed -


Gene co-expression network
sample Sobic007G001200 Sobic007G001200 Sobic001G333300 Sobic001G333300 Sobic007G001200--Sobic001G333300 Sobic007G001500 Sobic007G001500 Sobic007G001200--Sobic007G001500 Sobic003G317500 Sobic003G317500 Sobic007G001200--Sobic003G317500 Sobic010G147000 Sobic010G147000 Sobic007G001200--Sobic010G147000 Sobic007G165600 Sobic007G165600 Sobic007G001200--Sobic007G165600 Sobic009G056200 Sobic009G056200 Sobic007G001200--Sobic009G056200 Sobic006G072601 Sobic006G072601 Sobic007G001200--Sobic006G072601 Sobic009G222500 Sobic009G222500 Sobic007G001200--Sobic009G222500 Sobic010G139600 Sobic010G139600 Sobic007G001200--Sobic010G139600 Sobic001G333300--Sobic007G001200 Sobic001G333300--Sobic006G072601 Sobic009G121400 Sobic009G121400 Sobic001G333300--Sobic009G121400 Sobic003G127001 Sobic003G127001 Sobic001G333300--Sobic003G127001 Sobic004G038800 Sobic004G038800 Sobic001G333300--Sobic004G038800 Sobic007G010700 Sobic007G010700 Sobic001G333300--Sobic007G010700 Sobic001G479100 Sobic001G479100 Sobic001G333300--Sobic001G479100 Sobic009G097200 Sobic009G097200 Sobic001G333300--Sobic009G097200 Sobic003G434900 Sobic003G434900 Sobic001G333300--Sobic003G434900 Sobic007G001500--Sobic007G001200 Sobic002G308500 Sobic002G308500 Sobic007G001500--Sobic002G308500 Sobic005G003300 Sobic005G003300 Sobic007G001500--Sobic005G003300 Sobic003G279900 Sobic003G279900 Sobic007G001500--Sobic003G279900 Sobic005G034300 Sobic005G034300 Sobic007G001500--Sobic005G034300 Sobic006G103200 Sobic006G103200 Sobic007G001500--Sobic006G103200 Sobic001G105700 Sobic001G105700 Sobic007G001500--Sobic001G105700 Sobic009G201700 Sobic009G201700 Sobic007G001500--Sobic009G201700 Sobic008G124800 Sobic008G124800 Sobic007G001500--Sobic008G124800 Sobic003G301900 Sobic003G301900 Sobic003G317500--Sobic003G301900 Sobic001G517800 Sobic001G517800 Sobic003G317500--Sobic001G517800 Sobic003G320700 Sobic003G320700 Sobic003G317500--Sobic003G320700 Sobic003G317500--Sobic003G434900 Sobic006G087700 Sobic006G087700 Sobic003G317500--Sobic006G087700 Sobic005G149200 Sobic005G149200 Sobic003G317500--Sobic005G149200 Sobic003G317500--Sobic010G139600 Sobic009G011600 Sobic009G011600 Sobic003G317500--Sobic009G011600 Sobic006G233500 Sobic006G233500 Sobic003G317500--Sobic006G233500 Sobic006G041600 Sobic006G041600 Sobic010G147000--Sobic006G041600 Sobic003G220800 Sobic003G220800 Sobic010G147000--Sobic003G220800 Sobic004G291900 Sobic004G291900 Sobic010G147000--Sobic004G291900 Sobic001G333100 Sobic001G333100 Sobic010G147000--Sobic001G333100 Sobic009G075800 Sobic009G075800 Sobic010G147000--Sobic009G075800 Sobic008G070800 Sobic008G070800 Sobic010G147000--Sobic008G070800 Sobic005G059800 Sobic005G059800 Sobic010G147000--Sobic005G059800 Sobic001G194200 Sobic001G194200 Sobic010G147000--Sobic001G194200 Sobic010G013200 Sobic010G013200 Sobic010G147000--Sobic010G013200 Sobic007G103100 Sobic007G103100 Sobic007G165600--Sobic007G103100 Sobic006G055200 Sobic006G055200 Sobic007G165600--Sobic006G055200 Sobic001G004400 Sobic001G004400 Sobic007G165600--Sobic001G004400 Sobic005G122700 Sobic005G122700 Sobic007G165600--Sobic005G122700 Sobic002G133300 Sobic002G133300 Sobic007G165600--Sobic002G133300 Sobic007G165600--Sobic009G056200 Sobic007G165600--Sobic001G194200 Sobic002G316600 Sobic002G316600 Sobic007G165600--Sobic002G316600 Sobic003G186000 Sobic003G186000 Sobic007G165600--Sobic003G186000 Sobic005G172500 Sobic005G172500 Sobic009G056200--Sobic005G172500 Sobic009G056200--Sobic001G194200 Sobic001G227400 Sobic001G227400 Sobic009G056200--Sobic001G227400 Sobic009G056200--Sobic006G055200 Sobic003G195000 Sobic003G195000 Sobic009G056200--Sobic003G195000 Sobic007G207200 Sobic007G207200 Sobic009G056200--Sobic007G207200 Sobic008G063300 Sobic008G063300 Sobic009G056200--Sobic008G063300 Sobic002G142900 Sobic002G142900 Sobic009G056200--Sobic002G142900 Sobic006G055300 Sobic006G055300 Sobic009G056200--Sobic006G055300 Sobic006G072601--Sobic004G038800 Sobic006G072601--Sobic001G333300 Sobic006G072601--Sobic009G121400 Sobic002G115075 Sobic002G115075 Sobic006G072601--Sobic002G115075 Sobic004G113000 Sobic004G113000 Sobic006G072601--Sobic004G113000 Sobic007G198400 Sobic007G198400 Sobic006G072601--Sobic007G198400 Sobic008G105366 Sobic008G105366 Sobic006G072601--Sobic008G105366 Sobic003G416000 Sobic003G416000 Sobic006G072601--Sobic003G416000 Sobic005G007000 Sobic005G007000 Sobic006G072601--Sobic005G007000 Sobic009G222500--Sobic009G075800 Sobic006G049700 Sobic006G049700 Sobic009G222500--Sobic006G049700 Sobic001G080700 Sobic001G080700 Sobic009G222500--Sobic001G080700 Sobic006G101700 Sobic006G101700 Sobic009G222500--Sobic006G101700 Sobic004G066200 Sobic004G066200 Sobic009G222500--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic009G222500--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic009G222500--Sobic010G027600 Sobic003G264200 Sobic003G264200 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic007G075400 Sobic007G075400 Sobic010G139600--Sobic007G075400 Sobic002G146300 Sobic002G146300 Sobic010G139600--Sobic002G146300 Sobic003G205200 Sobic003G205200 Sobic010G139600--Sobic003G205200 Sobic008G098900 Sobic008G098900 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic005G001000 Sobic005G001000 Sobic010G139600--Sobic005G001000 Sobic010G139600--Sobic001G194200 Sobic003G422500 Sobic003G422500 Sobic010G139600--Sobic003G422500 Sobic001G370900 Sobic001G370900 Sobic010G139600--Sobic001G370900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.