Gene annotation
Transcriptome id Sobic.003G434900.2,Sobic.003G434900.1
Synonym Sb03g046580
Functional annotation copine, putative, expressed
UniProt A0A1B6Q8D3 , A0A1B6Q8C7
Pfam PF13920 PF07002
Panther DB PTHR10857 PTHR10857:SF18
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K16280; E3 ubiquitin-protein ligase RGLG
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63970 : Copine (Calcium-dependent phospholipid-binding protein) family
RAP-DB (Rice) LOC_Os01g73000.2 : copine, putative, expressed
MaizeGDB (Corn) Zm00025a051350 , Zm00025a000531 , Zm00025a040750 , Zm00025a039074
Brachypodium PNT73631
Barley HORVU3Hr1G110870.10 , HORVU3Hr1G110870.11 , HORVU3Hr1G110870.12 , HORVU3Hr1G110870.13 , HORVU3Hr1G110870.14 , HORVU3Hr1G110870.15 , HORVU3Hr1G110870.16 , HORVU3Hr1G110870.2 , HORVU3Hr1G110870.3 , HORVU3Hr1G110870.1 , HORVU3Hr1G110870.7 , HORVU3Hr1G110870.4 , HORVU3Hr1G110870.5 , HORVU3Hr1G110870.8
Wheat TraesCS3A02G503300 , TraesCS3A02G503300 , TraesCS3B02G566800 , TraesCS3A02G503400 , TraesCS3B02G566700
Populus PNT10252 , PNT10253 , PNT10254 , PNT01148 , PNT01147


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cDNA sequences
Sobic.003G434900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G149200 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
2 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
3 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
4 Sobic.001G073500 5-nucleotidase domain-containing protein, putative, expressed -
5 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
6 Sobic.003G317500 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
7 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
8 Sobic.006G087700 T-complex protein 11, putative, expressed -
9 Sobic.006G225900 expressed protein -
10 Sobic.001G016700 ion channel DMI1-like, chloroplast precursor, putative, expressed -
11 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
12 Sobic.001G268200 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
14 Sobic.001G517800 NIN, putative, expressed -
15 Sobic.006G133900 NIN, putative, expressed -
16 Sobic.010G175400 - -
17 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.006G204900 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
19 Sobic.010G224000 molybdenum cofactor sulfurase, putative, expressed K15631: molybdenum cofactor sulfurtransferase
20 Sobic.001G373900 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic003G434900 Sobic003G434900 Sobic005G149200 Sobic005G149200 Sobic003G434900--Sobic005G149200 Sobic001G375100 Sobic001G375100 Sobic003G434900--Sobic001G375100 Sobic003G205200 Sobic003G205200 Sobic003G434900--Sobic003G205200 Sobic001G073500 Sobic001G073500 Sobic003G434900--Sobic001G073500 Sobic001G454500 Sobic001G454500 Sobic003G434900--Sobic001G454500 Sobic003G317500 Sobic003G317500 Sobic003G434900--Sobic003G317500 Sobic010G139600 Sobic010G139600 Sobic003G434900--Sobic010G139600 Sobic006G087700 Sobic006G087700 Sobic003G434900--Sobic006G087700 Sobic006G225900 Sobic006G225900 Sobic003G434900--Sobic006G225900 Sobic005G149200--Sobic001G375100 Sobic006G219600 Sobic006G219600 Sobic005G149200--Sobic006G219600 Sobic005G149200--Sobic001G454500 Sobic006G133900 Sobic006G133900 Sobic005G149200--Sobic006G133900 Sobic003G301900 Sobic003G301900 Sobic005G149200--Sobic003G301900 Sobic001G517800 Sobic001G517800 Sobic005G149200--Sobic001G517800 Sobic001G333800 Sobic001G333800 Sobic005G149200--Sobic001G333800 Sobic007G090403 Sobic007G090403 Sobic005G149200--Sobic007G090403 Sobic003G155100 Sobic003G155100 Sobic005G149200--Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G375100--Sobic008G001200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G375100--Sobic001G454500 Sobic010G010700 Sobic010G010700 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic002G146300 Sobic002G146300 Sobic003G205200--Sobic002G146300 Sobic003G205200--Sobic005G001000 Sobic003G205200--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic003G205200--Sobic001G370900 Sobic003G186000 Sobic003G186000 Sobic003G205200--Sobic003G186000 Sobic003G205200--Sobic010G139600 Sobic004G276400 Sobic004G276400 Sobic003G205200--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic003G205200--Sobic001G194200 Sobic008G098900 Sobic008G098900 Sobic003G205200--Sobic008G098900 Sobic007G201500 Sobic007G201500 Sobic001G073500--Sobic007G201500 Sobic009G011600 Sobic009G011600 Sobic001G073500--Sobic009G011600 Sobic001G073500--Sobic003G434900 Sobic001G073500--Sobic005G149200 Sobic006G080800 Sobic006G080800 Sobic001G073500--Sobic006G080800 Sobic006G205100 Sobic006G205100 Sobic001G073500--Sobic006G205100 Sobic001G073500--Sobic006G087700 Sobic001G073500--Sobic001G375100 Sobic010G205100 Sobic010G205100 Sobic001G073500--Sobic010G205100 Sobic003G388100 Sobic003G388100 Sobic001G454500--Sobic003G388100 Sobic008G130100 Sobic008G130100 Sobic001G454500--Sobic008G130100 Sobic001G454500--Sobic006G133900 Sobic001G454500--Sobic001G375100 Sobic001G365900 Sobic001G365900 Sobic001G454500--Sobic001G365900 Sobic001G454500--Sobic008G001200 Sobic001G454500--Sobic010G010700 Sobic001G454500--Sobic003G155100 Sobic001G454500--Sobic003G247500 Sobic003G317500--Sobic003G301900 Sobic003G317500--Sobic001G517800 Sobic003G320700 Sobic003G320700 Sobic003G317500--Sobic003G320700 Sobic003G317500--Sobic003G434900 Sobic003G317500--Sobic006G087700 Sobic003G317500--Sobic005G149200 Sobic003G317500--Sobic010G139600 Sobic003G317500--Sobic009G011600 Sobic006G233500 Sobic006G233500 Sobic003G317500--Sobic006G233500 Sobic007G075400 Sobic007G075400 Sobic010G139600--Sobic007G075400 Sobic010G139600--Sobic002G146300 Sobic010G139600--Sobic003G205200 Sobic010G139600--Sobic008G098900 Sobic003G313500 Sobic003G313500 Sobic010G139600--Sobic003G313500 Sobic010G139600--Sobic005G001000 Sobic010G139600--Sobic001G194200 Sobic003G422500 Sobic003G422500 Sobic010G139600--Sobic003G422500 Sobic010G139600--Sobic001G370900 Sobic006G087700--Sobic007G075400 Sobic003G322700 Sobic003G322700 Sobic006G087700--Sobic003G322700 Sobic006G087700--Sobic006G233500 Sobic006G087700--Sobic010G139600 Sobic006G087700--Sobic003G301900 Sobic006G087700--Sobic003G320700 Sobic006G204900 Sobic006G204900 Sobic006G087700--Sobic006G204900 Sobic002G128200 Sobic002G128200 Sobic006G087700--Sobic002G128200 Sobic006G043600 Sobic006G043600 Sobic006G087700--Sobic006G043600 Sobic003G086900 Sobic003G086900 Sobic006G225900--Sobic003G086900 Sobic004G174200 Sobic004G174200 Sobic006G225900--Sobic004G174200 Sobic006G225900--Sobic001G375100 Sobic004G291900 Sobic004G291900 Sobic006G225900--Sobic004G291900 Sobic009G110000 Sobic009G110000 Sobic006G225900--Sobic009G110000 Sobic001G390800 Sobic001G390800 Sobic006G225900--Sobic001G390800 Sobic001G268200 Sobic001G268200 Sobic006G225900--Sobic001G268200 Sobic001G016700 Sobic001G016700 Sobic006G225900--Sobic001G016700 Sobic002G411600 Sobic002G411600 Sobic006G225900--Sobic002G411600
Octagon: transcription factors


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