Gene annotation
| Transcriptome id | Sobic.004G193900.1 |
|---|---|
| Synonym | |
| Functional annotation | expressed protein |
| UniProt | A0A194YRQ6 |
| Pfam | - |
| Panther DB | - |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | - |
|---|---|
| RAP-DB (Rice) | LOC_Os02g37100.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a020865 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G107700 | expressed protein | - |
| 2 | Sobic.007G087200 | MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 3 | Sobic.001G224000 | receptor-like protein kinase precursor, putative, expressed | - |
| 4 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 5 | Sobic.006G234800 | expressed protein | - |
| 6 | Sobic.001G449600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed | - |
| 7 | Sobic.001G304100 | LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 8 | Sobic.002G125700 | similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 9 | Sobic.006G132900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 11 | Sobic.001G161500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 12 | Sobic.003G255500 | expressed protein | - |
| 13 | Sobic.003G255200 | expressed protein | - |
| 14 | Sobic.001G238400 | expansin precursor, putative, expressed | - |
| 15 | Sobic.001G231700 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 16 | Sobic.003G184100 | auxin-induced protein 5NG4, putative, expressed | - |
| 17 | Sobic.010G184800 | heme oxygenase 1, putative, expressed | K00510: heme oxygenase 1 |
| 18 | Sobic.006G199800 | Orthologous gene to AtMYB58 and AtMYB63(PubMedID : 26712107)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 19 | Sobic.009G139400 | expressed protein | - |
| 20 | Sobic.010G259600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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