Gene annotation
Transcriptome id Sobic.004G201300.1
Synonym Sb04g024760
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
UniProt C5XWI8
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67900 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os02g38120.1 : BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed
MaizeGDB (Corn) Zm00025a008065 , Zm00025a021325 , Zm00025a031825 , Zm00025a010992 , Zm00025a009620 , Zm00025a027282
Brachypodium PNT61947 , KQK10073 , KQK13304 , KQK00153 , PNT61948 , PNT61949
Barley HORVU7Hr1G030460.4 , HORVU7Hr1G030460.5 , HORVU7Hr1G030460.6 , HORVU7Hr1G030460.7 , HORVU7Hr1G030460.1 , HORVU7Hr1G030460.2 , HORVU7Hr1G030460.3 , HORVU7Hr1G030460.8 , HORVU7Hr1G030460.9 , HORVU7Hr1G030460.14 , HORVU7Hr1G030460.12 , HORVU7Hr1G030460.13 , HORVU7Hr1G030460.10 , HORVU7Hr1G030460.11 , HORVU5Hr1G093880.2 , HORVU5Hr1G093880.1 , HORVU6Hr1G053490.3 , HORVU6Hr1G053490.2 , HORVU6Hr1G053490.1 , HORVU6Hr1G053490.4 , HORVU5Hr1G093850.4 , HORVU5Hr1G093850.5 , HORVU5Hr1G093850.6 , HORVU5Hr1G093850.7 , HORVU5Hr1G093850.1 , HORVU5Hr1G093850.2 , HORVU5Hr1G093850.3 , HORVU5Hr1G093850.8 , HORVU5Hr1G093850.9 , HORVU6Hr1G022500.1 , HORVU6Hr1G022500.2 , HORVU3Hr1G076740.2 , HORVU3Hr1G076740.1 , HORVU5Hr1G093850.16 , HORVU5Hr1G093850.14 , HORVU5Hr1G093850.15 , HORVU5Hr1G093850.12 , HORVU5Hr1G093850.13 , HORVU5Hr1G093850.10 , HORVU5Hr1G093850.11 , HORVU5Hr1G093850.19
Wheat TraesCS5A02G403400 , TraesCS7D02G150700 , TraesCS2B02G557300 , TraesCS7D02G150700 , TraesCS6B02G237800 , TraesCS5D02G389200 , TraesCS5D02G389200 , TraesCS6A02G208800 , TraesCS7A02G149100 , TraesCS2A02G526900 , TraesCS2B02G557300 , TraesCS6D02G192300 , TraesCS6D02G192300 , TraesCS5B02G383100 , TraesCS3A02G317300 , TraesCS2D02G529600 , TraesCS5D02G413400 , TraesCS2D02G507400 , TraesCS3D02G314000 , TraesCS5B02G408200 , TraesCS7A02G149100 , TraesCS7A02G149100 , TraesCS3B02G349200
Populus -


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cDNA sequences
Sobic.004G201300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G078300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
2 Sobic.007G060900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed -
3 Sobic.008G106600 - -
4 Sobic.001G074400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@stress-induced protein, putative, expressed -
5 Sobic.010G166700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed -
6 Sobic.001G261537 - -
7 Sobic.008G109100 expressed protein -
8 Sobic.005G064700 expressed protein -
9 Sobic.001G542800 formyl transferase, putative, expressed K01433: formyltetrahydrofolate deformylase
10 Sobic.008G000100 monoglyceride lipase, putative, expressed -
11 Sobic.010G077600 gb protein, putative, expressed -
12 Sobic.004G016100 expressed protein -
13 Sobic.009G136900 peptide transporter PTR2, putative, expressed -
14 Sobic.002G205900 receptor-like protein kinase 2 precursor, putative, expressed -
15 Sobic.009G029500 cation efflux family protein, putative, expressed K14689: SLC30A2, solute carrier family 30 (zinc transporter), member 2
16 Sobic.002G136900 - -
17 Sobic.006G158000 expressed protein -
18 Sobic.003G176200 - -
19 Sobic.001G254400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
20 Sobic.010G123300 expressed protein -


Gene co-expression network
sample Sobic004G201300 Sobic004G201300 Sobic001G078300 Sobic001G078300 Sobic004G201300--Sobic001G078300 Sobic007G060900 Sobic007G060900 Sobic004G201300--Sobic007G060900 Sobic008G106600 Sobic008G106600 Sobic004G201300--Sobic008G106600 Sobic001G074400 Sobic001G074400 Sobic004G201300--Sobic001G074400 Sobic010G166700 Sobic010G166700 Sobic004G201300--Sobic010G166700 Sobic001G261537 Sobic001G261537 Sobic004G201300--Sobic001G261537 Sobic008G109100 Sobic008G109100 Sobic004G201300--Sobic008G109100 Sobic005G064700 Sobic005G064700 Sobic004G201300--Sobic005G064700 Sobic001G542800 Sobic001G542800 Sobic004G201300--Sobic001G542800 Sobic001G078300--Sobic001G261537 Sobic001G087100 Sobic001G087100 Sobic001G078300--Sobic001G087100 Sobic003G156766 Sobic003G156766 Sobic001G078300--Sobic003G156766 Sobic001G078300--Sobic008G106600 Sobic001G078300--Sobic005G064700 Sobic009G197200 Sobic009G197200 Sobic001G078300--Sobic009G197200 Sobic007G066050 Sobic007G066050 Sobic001G078300--Sobic007G066050 Sobic008G091671 Sobic008G091671 Sobic001G078300--Sobic008G091671 Sobic001G164200 Sobic001G164200 Sobic001G078300--Sobic001G164200 Sobic006G265400 Sobic006G265400 Sobic007G060900--Sobic006G265400 Sobic001G426400 Sobic001G426400 Sobic007G060900--Sobic001G426400 Sobic001G254400 Sobic001G254400 Sobic007G060900--Sobic001G254400 Sobic004G070200 Sobic004G070200 Sobic007G060900--Sobic004G070200 Sobic004G247800 Sobic004G247800 Sobic007G060900--Sobic004G247800 Sobic009G197000 Sobic009G197000 Sobic007G060900--Sobic009G197000 Sobic002G172600 Sobic002G172600 Sobic007G060900--Sobic002G172600 Sobic007G182600 Sobic007G182600 Sobic007G060900--Sobic007G182600 Sobic010G270900 Sobic010G270900 Sobic007G060900--Sobic010G270900 Sobic008G106600--Sobic001G261537 Sobic006G068400 Sobic006G068400 Sobic008G106600--Sobic006G068400 Sobic008G106600--Sobic008G091671 Sobic005G128000 Sobic005G128000 Sobic008G106600--Sobic005G128000 Sobic008G106600--Sobic005G064700 Sobic008G106600--Sobic009G197200 Sobic010G139301 Sobic010G139301 Sobic008G106600--Sobic010G139301 Sobic009G067501 Sobic009G067501 Sobic008G106600--Sobic009G067501 Sobic004G289600 Sobic004G289600 Sobic008G106600--Sobic004G289600 Sobic002G348000 Sobic002G348000 Sobic001G074400--Sobic002G348000 Sobic001G420700 Sobic001G420700 Sobic001G074400--Sobic001G420700 Sobic004G053300 Sobic004G053300 Sobic001G074400--Sobic004G053300 Sobic002G205900 Sobic002G205900 Sobic001G074400--Sobic002G205900 Sobic005G046100 Sobic005G046100 Sobic001G074400--Sobic005G046100 Sobic001G074400--Sobic004G201300 Sobic003G356200 Sobic003G356200 Sobic001G074400--Sobic003G356200 Sobic009G013100 Sobic009G013100 Sobic001G074400--Sobic009G013100 Sobic009G230700 Sobic009G230700 Sobic001G074400--Sobic009G230700 Sobic002G110100 Sobic002G110100 Sobic010G166700--Sobic002G110100 Sobic010G166700--Sobic008G109100 Sobic010G050900 Sobic010G050900 Sobic010G166700--Sobic010G050900 Sobic010G166700--Sobic004G201300 Sobic002G226700 Sobic002G226700 Sobic010G166700--Sobic002G226700 Sobic010G123300 Sobic010G123300 Sobic010G166700--Sobic010G123300 Sobic001G021500 Sobic001G021500 Sobic010G166700--Sobic001G021500 Sobic009G136900 Sobic009G136900 Sobic010G166700--Sobic009G136900 Sobic007G154800 Sobic007G154800 Sobic010G166700--Sobic007G154800 Sobic001G261537--Sobic008G106600 Sobic001G261537--Sobic005G128000 Sobic006G067100 Sobic006G067100 Sobic001G261537--Sobic006G067100 Sobic002G182300 Sobic002G182300 Sobic001G261537--Sobic002G182300 Sobic001G261537--Sobic009G197200 Sobic001G261537--Sobic010G139301 Sobic001G261537--Sobic001G078300 Sobic001G261537--Sobic006G068400 Sobic001G261537--Sobic008G091671 Sobic008G065800 Sobic008G065800 Sobic008G109100--Sobic008G065800 Sobic005G079700 Sobic005G079700 Sobic008G109100--Sobic005G079700 Sobic008G109100--Sobic008G106600 Sobic008G000800 Sobic008G000800 Sobic008G109100--Sobic008G000800 Sobic010G004400 Sobic010G004400 Sobic008G109100--Sobic010G004400 Sobic003G277900 Sobic003G277900 Sobic008G109100--Sobic003G277900 Sobic008G109100--Sobic010G166700 Sobic008G109100--Sobic008G091671 Sobic008G109100--Sobic002G205900 Sobic005G064700--Sobic008G106600 Sobic005G064700--Sobic001G261537 Sobic006G028700 Sobic006G028700 Sobic005G064700--Sobic006G028700 Sobic003G068750 Sobic003G068750 Sobic005G064700--Sobic003G068750 Sobic004G089500 Sobic004G089500 Sobic005G064700--Sobic004G089500 Sobic009G228400 Sobic009G228400 Sobic005G064700--Sobic009G228400 Sobic009G000400 Sobic009G000400 Sobic005G064700--Sobic009G000400 Sobic002G019750 Sobic002G019750 Sobic005G064700--Sobic002G019750 Sobic004G068100 Sobic004G068100 Sobic005G064700--Sobic004G068100 Sobic006G216000 Sobic006G216000 Sobic001G542800--Sobic006G216000 Sobic001G542800--Sobic004G247800 Sobic006G095800 Sobic006G095800 Sobic001G542800--Sobic006G095800 Sobic001G096300 Sobic001G096300 Sobic001G542800--Sobic001G096300 Sobic002G344500 Sobic002G344500 Sobic001G542800--Sobic002G344500 Sobic001G296400 Sobic001G296400 Sobic001G542800--Sobic001G296400 Sobic004G283600 Sobic004G283600 Sobic001G542800--Sobic004G283600 Sobic001G478600 Sobic001G478600 Sobic001G542800--Sobic001G478600 Sobic001G127100 Sobic001G127100 Sobic001G542800--Sobic001G127100
Octagon: transcription factors


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