Gene annotation
Transcriptome id Sobic.004G221000.2,Sobic.004G221000.1
Synonym ATCNGC15, Sb04g026580, CNGC15
Functional annotation cyclic nucleotide-gated ion channel, putative, expressed
UniProt C5XXU5 , A0A1Z5RPH6
Pfam PF00520
Panther DB PTHR10217 PTHR10217:SF494
NCBI CDD -
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT2G28260 : cyclic nucleotide-gated channel 15
RAP-DB (Rice) LOC_Os02g41710.1 : cyclic nucleotide-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a017251 , Zm00025a032038 , Zm00025a021090
Brachypodium KQK00201 , PNT69100 , KQK00418
Barley HORVU6Hr1G058880.11 , HORVU6Hr1G058880.10 , HORVU6Hr1G058880.13 , HORVU6Hr1G058880.12 , HORVU6Hr1G058880.15 , HORVU6Hr1G058880.14 , HORVU6Hr1G058880.5 , HORVU6Hr1G058880.4 , HORVU6Hr1G058880.7 , HORVU6Hr1G058880.6 , HORVU6Hr1G058880.1 , HORVU6Hr1G058880.3 , HORVU6Hr1G058880.2 , HORVU5Hr1G092890.2 , HORVU6Hr1G058880.9 , HORVU6Hr1G058880.8 , HORVU5Hr1G092890.3 , HORVU5Hr1G092890.1
Wheat TraesCS6A02G222600 , TraesCS6A02G222600 , TraesCS6A02G212000 , TraesCS6B02G242900 , TraesCS6D02G212600 , TraesCS6D02G212600 , TraesCS6B02G258700 , TraesCS6B02G258700 , TraesCS5D02G383700 , TraesCS5A02G374200 , TraesCS5B02G376100 , TraesCS6D02G195600
Populus -


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cDNA sequences
Sobic.004G221000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G046100 CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
2 Sobic.004G099800 expressed protein K14376: poly(A) polymerase
3 Sobic.001G175500 transcription factor X1, putative, expressed -
4 Sobic.009G022800 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
5 Sobic.003G396200 expressed protein K13146: integrator complex subunit 9
6 Sobic.005G045000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed K09480: digalactosyldiacylglycerol synthase
7 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.003G354300 csAtPR5, putative, expressed -
9 Sobic.006G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed -
10 Sobic.009G140500 no apical meristem protein, putative, expressed -
11 Sobic.010G248700 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
12 Sobic.007G020500 expressed protein K15198: BDP1, transcription factor TFIIIB component B''
13 Sobic.003G161000 powdery mildew resistance protein PM3F, putative, expressed -
14 Sobic.003G109500 expressed protein -
15 Sobic.003G188900 expressed protein -
16 Sobic.003G238700 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.006G024200 receptor-like protein kinase, putative, expressed -
18 Sobic.003G313300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plus-3 domain containing protein, expressed -
19 Sobic.005G118400 expressed protein -
20 Sobic.004G028500 pyridoxal biosynthesis protein PDX2, putative, expressed K08681: pdxT, 5'-phosphate synthase pdxT subunit


Gene co-expression network
sample Sobic004G221000 Sobic004G221000 Sobic007G046100 Sobic007G046100 Sobic004G221000--Sobic007G046100 Sobic004G099800 Sobic004G099800 Sobic004G221000--Sobic004G099800 Sobic001G175500 Sobic001G175500 Sobic004G221000--Sobic001G175500 Sobic009G022800 Sobic009G022800 Sobic004G221000--Sobic009G022800 Sobic003G396200 Sobic003G396200 Sobic004G221000--Sobic003G396200 Sobic005G045000 Sobic005G045000 Sobic004G221000--Sobic005G045000 Sobic010G256700 Sobic010G256700 Sobic004G221000--Sobic010G256700 Sobic003G354300 Sobic003G354300 Sobic004G221000--Sobic003G354300 Sobic006G186500 Sobic006G186500 Sobic004G221000--Sobic006G186500 Sobic007G046100--Sobic004G221000 Sobic006G177400 Sobic006G177400 Sobic007G046100--Sobic006G177400 Sobic002G206600 Sobic002G206600 Sobic007G046100--Sobic002G206600 Sobic007G116700 Sobic007G116700 Sobic007G046100--Sobic007G116700 Sobic004G227600 Sobic004G227600 Sobic007G046100--Sobic004G227600 Sobic001G207100 Sobic001G207100 Sobic007G046100--Sobic001G207100 Sobic001G167100 Sobic001G167100 Sobic007G046100--Sobic001G167100 Sobic003G133700 Sobic003G133700 Sobic007G046100--Sobic003G133700 Sobic003G106900 Sobic003G106900 Sobic007G046100--Sobic003G106900 Sobic006G079400 Sobic006G079400 Sobic004G099800--Sobic006G079400 Sobic003G037700 Sobic003G037700 Sobic004G099800--Sobic003G037700 Sobic010G232200 Sobic010G232200 Sobic004G099800--Sobic010G232200 Sobic002G145101 Sobic002G145101 Sobic004G099800--Sobic002G145101 Sobic004G007100 Sobic004G007100 Sobic004G099800--Sobic004G007100 Sobic006G048500 Sobic006G048500 Sobic004G099800--Sobic006G048500 Sobic004G326200 Sobic004G326200 Sobic004G099800--Sobic004G326200 Sobic005G144400 Sobic005G144400 Sobic004G099800--Sobic005G144400 Sobic002G243900 Sobic002G243900 Sobic004G099800--Sobic002G243900 Sobic003G188900 Sobic003G188900 Sobic001G175500--Sobic003G188900 Sobic006G123600 Sobic006G123600 Sobic001G175500--Sobic006G123600 Sobic004G078400 Sobic004G078400 Sobic001G175500--Sobic004G078400 Sobic010G103000 Sobic010G103000 Sobic001G175500--Sobic010G103000 Sobic010G119800 Sobic010G119800 Sobic001G175500--Sobic010G119800 Sobic001G175500--Sobic004G221000 Sobic007G202000 Sobic007G202000 Sobic001G175500--Sobic007G202000 Sobic003G292500 Sobic003G292500 Sobic001G175500--Sobic003G292500 Sobic003G379400 Sobic003G379400 Sobic001G175500--Sobic003G379400 Sobic009G066100 Sobic009G066100 Sobic009G022800--Sobic009G066100 Sobic009G022800--Sobic004G221000 Sobic004G216500 Sobic004G216500 Sobic009G022800--Sobic004G216500 Sobic003G163500 Sobic003G163500 Sobic009G022800--Sobic003G163500 Sobic003G167632 Sobic003G167632 Sobic009G022800--Sobic003G167632 Sobic005G076000 Sobic005G076000 Sobic009G022800--Sobic005G076000 Sobic004G257500 Sobic004G257500 Sobic009G022800--Sobic004G257500 Sobic003G178700 Sobic003G178700 Sobic009G022800--Sobic003G178700 Sobic010G248301 Sobic010G248301 Sobic009G022800--Sobic010G248301 Sobic003G396200--Sobic010G256700 Sobic007G193700 Sobic007G193700 Sobic003G396200--Sobic007G193700 Sobic001G159400 Sobic001G159400 Sobic003G396200--Sobic001G159400 Sobic007G116200 Sobic007G116200 Sobic003G396200--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic003G396200--Sobic006G131500 Sobic002G127550 Sobic002G127550 Sobic003G396200--Sobic002G127550 Sobic004G209600 Sobic004G209600 Sobic003G396200--Sobic004G209600 Sobic001G375100 Sobic001G375100 Sobic003G396200--Sobic001G375100 Sobic006G216800 Sobic006G216800 Sobic003G396200--Sobic006G216800 Sobic003G313300 Sobic003G313300 Sobic005G045000--Sobic003G313300 Sobic001G305600 Sobic001G305600 Sobic005G045000--Sobic001G305600 Sobic001G468700 Sobic001G468700 Sobic005G045000--Sobic001G468700 Sobic003G017100 Sobic003G017100 Sobic005G045000--Sobic003G017100 Sobic004G028500 Sobic004G028500 Sobic005G045000--Sobic004G028500 Sobic003G191700 Sobic003G191700 Sobic005G045000--Sobic003G191700 Sobic004G347800 Sobic004G347800 Sobic005G045000--Sobic004G347800 Sobic008G151100 Sobic008G151100 Sobic005G045000--Sobic008G151100 Sobic008G168300 Sobic008G168300 Sobic005G045000--Sobic008G168300 Sobic010G256700--Sobic007G116200 Sobic010G256700--Sobic003G396200 Sobic006G182900 Sobic006G182900 Sobic010G256700--Sobic006G182900 Sobic010G256700--Sobic001G159400 Sobic010G248700 Sobic010G248700 Sobic010G256700--Sobic010G248700 Sobic010G256700--Sobic007G193700 Sobic006G133900 Sobic006G133900 Sobic010G256700--Sobic006G133900 Sobic001G454500 Sobic001G454500 Sobic010G256700--Sobic001G454500 Sobic002G104100 Sobic002G104100 Sobic010G256700--Sobic002G104100 Sobic004G034800 Sobic004G034800 Sobic003G354300--Sobic004G034800 Sobic007G020500 Sobic007G020500 Sobic003G354300--Sobic007G020500 Sobic004G354200 Sobic004G354200 Sobic003G354300--Sobic004G354200 Sobic003G354300--Sobic007G193700 Sobic002G168300 Sobic002G168300 Sobic003G354300--Sobic002G168300 Sobic003G138500 Sobic003G138500 Sobic003G354300--Sobic003G138500 Sobic003G161100 Sobic003G161100 Sobic003G354300--Sobic003G161100 Sobic010G176550 Sobic010G176550 Sobic003G354300--Sobic010G176550 Sobic006G216100 Sobic006G216100 Sobic003G354300--Sobic006G216100 Sobic009G143500 Sobic009G143500 Sobic006G186500--Sobic009G143500 Sobic004G179400 Sobic004G179400 Sobic006G186500--Sobic004G179400 Sobic009G207900 Sobic009G207900 Sobic006G186500--Sobic009G207900 Sobic001G504400 Sobic001G504400 Sobic006G186500--Sobic001G504400 Sobic010G043800 Sobic010G043800 Sobic006G186500--Sobic010G043800 Sobic007G015500 Sobic007G015500 Sobic006G186500--Sobic007G015500 Sobic001G054000 Sobic001G054000 Sobic006G186500--Sobic001G054000 Sobic003G203300 Sobic003G203300 Sobic006G186500--Sobic003G203300 Sobic005G118400 Sobic005G118400 Sobic006G186500--Sobic005G118400
Octagon: transcription factors


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