Gene annotation
Transcriptome id Sobic.003G396200.1
Synonym Sb03g043310
Functional annotation expressed protein
UniProt A0A1B6Q7R3
Pfam PF10996
Panther DB PTHR11203 PTHR11203:SF2
NCBI CDD KOG1138; Predicted cleavage and polyadenylation specificity factor (CPSF subunit)
KEGG Orthology K13146; integrator complex subunit 9
Gene Ontology GO:0016180; snRNA processing


Orthologs (automatic annotation)
TAIR AT3G07530 : -
RAP-DB (Rice) LOC_Os03g13960.2 : expressed protein
MaizeGDB (Corn) Zm00025a026347
Brachypodium KQK11064
Barley -
Wheat TraesCS3B02G449800 , TraesCS3B02G449800 , TraesCS3A02G414700 , TraesCS3A02G414700 , TraesCS3A02G414700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.007G193700 Sua5/YciO/YrdC/YwlC family protein, putative, expressed -
3 Sobic.001G159400 protein kinase domain containing protein, expressed -
4 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
5 Sobic.006G131500 serine/threonine-protein kinase GCN2, putative, expressed K16196: eukaryotic translation initiation factor 2-alpha kinase 4
6 Sobic.002G127550 - -
7 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
8 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
9 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
10 Sobic.001G433000 FAR1 family protein, expressed -
11 Sobic.001G454500 potyvirus VPg interacting protein, putative, expressed -
12 Sobic.001G418700 SLT1 protein, putative, expressed -
13 Sobic.003G247500 expressed protein -
14 Sobic.004G070500 expressed protein -
15 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
16 Sobic.003G138500 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
17 Sobic.003G086900 C2 domain containing protein, putative, expressed -
18 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
19 Sobic.010G010700 PHD-finger family protein, expressed -
20 Sobic.003G238700 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic003G396200 Sobic003G396200 Sobic010G256700 Sobic010G256700 Sobic003G396200--Sobic010G256700 Sobic007G193700 Sobic007G193700 Sobic003G396200--Sobic007G193700 Sobic001G159400 Sobic001G159400 Sobic003G396200--Sobic001G159400 Sobic007G116200 Sobic007G116200 Sobic003G396200--Sobic007G116200 Sobic006G131500 Sobic006G131500 Sobic003G396200--Sobic006G131500 Sobic002G127550 Sobic002G127550 Sobic003G396200--Sobic002G127550 Sobic004G209600 Sobic004G209600 Sobic003G396200--Sobic004G209600 Sobic001G375100 Sobic001G375100 Sobic003G396200--Sobic001G375100 Sobic006G216800 Sobic006G216800 Sobic003G396200--Sobic006G216800 Sobic010G256700--Sobic007G116200 Sobic010G256700--Sobic003G396200 Sobic006G182900 Sobic006G182900 Sobic010G256700--Sobic006G182900 Sobic010G256700--Sobic001G159400 Sobic010G248700 Sobic010G248700 Sobic010G256700--Sobic010G248700 Sobic010G256700--Sobic007G193700 Sobic006G133900 Sobic006G133900 Sobic010G256700--Sobic006G133900 Sobic001G454500 Sobic001G454500 Sobic010G256700--Sobic001G454500 Sobic002G104100 Sobic002G104100 Sobic010G256700--Sobic002G104100 Sobic004G263600 Sobic004G263600 Sobic007G193700--Sobic004G263600 Sobic003G086900 Sobic003G086900 Sobic007G193700--Sobic003G086900 Sobic004G200200 Sobic004G200200 Sobic007G193700--Sobic004G200200 Sobic004G174200 Sobic004G174200 Sobic007G193700--Sobic004G174200 Sobic002G134200 Sobic002G134200 Sobic007G193700--Sobic002G134200 Sobic010G239600 Sobic010G239600 Sobic007G193700--Sobic010G239600 Sobic003G139900 Sobic003G139900 Sobic007G193700--Sobic003G139900 Sobic003G247500 Sobic003G247500 Sobic007G193700--Sobic003G247500 Sobic007G193700--Sobic003G396200 Sobic003G381200 Sobic003G381200 Sobic001G159400--Sobic003G381200 Sobic003G138500 Sobic003G138500 Sobic001G159400--Sobic003G138500 Sobic001G090500 Sobic001G090500 Sobic001G159400--Sobic001G090500 Sobic001G159400--Sobic010G256700 Sobic001G159400--Sobic007G193700 Sobic002G276100 Sobic002G276100 Sobic001G159400--Sobic002G276100 Sobic001G159400--Sobic003G396200 Sobic004G181700 Sobic004G181700 Sobic001G159400--Sobic004G181700 Sobic004G317100 Sobic004G317100 Sobic001G159400--Sobic004G317100 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic007G116200--Sobic002G134200 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G116200--Sobic010G139000 Sobic007G116200--Sobic010G256700 Sobic007G116200--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic007G116200--Sobic003G280800 Sobic005G008800 Sobic005G008800 Sobic006G131500--Sobic005G008800 Sobic001G498600 Sobic001G498600 Sobic006G131500--Sobic001G498600 Sobic006G131500--Sobic004G209600 Sobic006G131500--Sobic003G280800 Sobic006G131500--Sobic006G216800 Sobic001G241200 Sobic001G241200 Sobic006G131500--Sobic001G241200 Sobic006G131500--Sobic002G134200 Sobic001G146800 Sobic001G146800 Sobic006G131500--Sobic001G146800 Sobic001G072500 Sobic001G072500 Sobic006G131500--Sobic001G072500 Sobic002G127550--Sobic003G138500 Sobic010G126000 Sobic010G126000 Sobic002G127550--Sobic010G126000 Sobic008G044100 Sobic008G044100 Sobic002G127550--Sobic008G044100 Sobic004G034800 Sobic004G034800 Sobic002G127550--Sobic004G034800 Sobic001G194200 Sobic001G194200 Sobic002G127550--Sobic001G194200 Sobic008G001200 Sobic008G001200 Sobic002G127550--Sobic008G001200 Sobic002G127550--Sobic010G010700 Sobic004G291900 Sobic004G291900 Sobic002G127550--Sobic004G291900 Sobic002G127550--Sobic004G209600 Sobic004G209600--Sobic010G139000 Sobic004G314000 Sobic004G314000 Sobic004G209600--Sobic004G314000 Sobic004G209600--Sobic010G010700 Sobic007G117400 Sobic007G117400 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic004G209600--Sobic002G134200 Sobic005G112300 Sobic005G112300 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic004G209600--Sobic003G280800 Sobic003G155100 Sobic003G155100 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic001G375100--Sobic003G247500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic007G198300 Sobic007G198300 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic006G216800--Sobic007G116200 Sobic002G309600 Sobic002G309600 Sobic006G216800--Sobic002G309600 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic006G216800--Sobic005G112300 Sobic006G216800--Sobic003G280800 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500
Octagon: transcription factors


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