Gene annotation
Transcriptome id Sobic.004G222000.1
Synonym PIP aquaporin, SbPIP2;3;plasma membrane intrinsic protein/aquaporin, PIP2;3, PIP2, PIP2B, Sb04g026650, SbPIP2;3;PIP aquaporin, 2
Functional annotation similar to Aquaporin PIP2-3 (PubMedID : 29862293)
- (PubMedID : 24879770)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Up-regulated by osmotic stress. (PubMedID : 24879770)
aquaporin protein, putative, expressed
UniProt C5XXV1
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF137
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09872; aquaporin PIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT2G37170 : plasma membrane intrinsic protein 2
RAP-DB (Rice) LOC_Os02g41860.2 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a045837 , Zm00025a021083 , Zm00025a032250 , Zm00025a032042 , Zm00025a010237 , Zm00025a032750 , Zm00025a010642 , Zm00025a049510 , Zm00025a013554 , Zm00025a017913
Brachypodium KQJ84016 , KQJ83644 , KQJ91256 , KQK11942 , KQK00428 , KQK00718 , KQK16441
Barley HORVU2Hr1G089820.11 , HORVU2Hr1G089820.10 , HORVU5Hr1G029550.1 , HORVU5Hr1G029550.2 , HORVU5Hr1G029550.3 , HORVU5Hr1G029550.4 , HORVU5Hr1G029550.5 , HORVU5Hr1G029550.6 , HORVU5Hr1G029550.7 , HORVU2Hr1G010990.4 , HORVU2Hr1G010990.3 , HORVU2Hr1G010990.2 , HORVU2Hr1G010990.1 , HORVU5Hr1G027240.4 , HORVU5Hr1G027240.5 , HORVU5Hr1G027240.2 , HORVU5Hr1G027240.3 , HORVU5Hr1G027240.1 , HORVU2Hr1G038740.12 , HORVU2Hr1G038740.10 , HORVU2Hr1G038740.11 , HORVU2Hr1G038740.16 , HORVU2Hr1G038740.14 , HORVU2Hr1G038740.15 , HORVU2Hr1G038740.18 , HORVU5Hr1G084230.1 , HORVU5Hr1G084230.2 , HORVU5Hr1G084230.4 , HORVU2Hr1G096360.6 , HORVU2Hr1G096360.4 , HORVU2Hr1G096360.5 , HORVU2Hr1G096360.2 , HORVU2Hr1G096360.3 , HORVU2Hr1G096360.1 , HORVU2Hr1G096360.8 , HORVU2Hr1G096360.9 , HORVU5Hr1G125600.1 , HORVU2Hr1G038740.8 , HORVU2Hr1G038740.1 , HORVU2Hr1G038740.2 , HORVU2Hr1G038740.3 , HORVU2Hr1G038740.5 , HORVU2Hr1G038740.6 , HORVU2Hr1G038740.7 , HORVU2Hr1G089820.5 , HORVU2Hr1G089820.4 , HORVU2Hr1G089820.7 , HORVU2Hr1G089820.6 , HORVU2Hr1G089820.1 , HORVU2Hr1G089820.3 , HORVU2Hr1G089820.2 , HORVU2Hr1G089820.9 , HORVU2Hr1G089820.8 , HORVU6Hr1G058930.9 , HORVU6Hr1G058930.8 , HORVU6Hr1G058930.5 , HORVU6Hr1G058930.4 , HORVU6Hr1G058930.7 , HORVU6Hr1G058930.6 , HORVU6Hr1G058930.1 , HORVU6Hr1G058930.3 , HORVU6Hr1G058930.2 , HORVU0Hr1G011280.6 , HORVU0Hr1G011280.4 , HORVU0Hr1G011280.5 , HORVU0Hr1G011280.2 , HORVU0Hr1G011280.3 , HORVU0Hr1G011280.1 , HORVU5Hr1G055200.7 , HORVU5Hr1G055200.6 , HORVU5Hr1G055200.5 , HORVU5Hr1G055200.4 , HORVU5Hr1G055200.3 , HORVU5Hr1G055200.1 , HORVU5Hr1G055200.8 , HORVU2Hr1G096360.14 , HORVU2Hr1G096360.15 , HORVU2Hr1G096360.16 , HORVU2Hr1G096360.10 , HORVU2Hr1G096360.11 , HORVU2Hr1G096360.12 , HORVU2Hr1G096360.13 , HORVU2Hr1G089940.7 , HORVU2Hr1G089940.6 , HORVU2Hr1G089940.14 , HORVU2Hr1G089940.4 , HORVU2Hr1G089940.5 , HORVU2Hr1G089940.2 , HORVU2Hr1G089940.3 , HORVU2Hr1G089940.15 , HORVU2Hr1G089940.8 , HORVU2Hr1G089940.9 , HORVU6Hr1G064140.5 , HORVU2Hr1G089940.1 , HORVU6Hr1G064140.3 , HORVU6Hr1G064140.2 , HORVU6Hr1G064140.1 , HORVU6Hr1G064140.4 , HORVU2Hr1G089940.18 , HORVU2Hr1G089940.19 , HORVU2Hr1G089940.16 , HORVU2Hr1G089940.17 , HORVU2Hr1G089940.10 , HORVU2Hr1G089940.11 , HORVU2Hr1G089940.12 , HORVU2Hr1G089940.13 , HORVU6Hr1G058930.20 , HORVU6Hr1G058930.21 , HORVU0Hr1G014490.4 , HORVU0Hr1G014490.5 , HORVU0Hr1G014490.6 , HORVU0Hr1G014490.7 , HORVU0Hr1G014490.1 , HORVU0Hr1G014490.2 , HORVU0Hr1G014490.3 , HORVU2Hr1G089940.21 , HORVU2Hr1G089940.20 , HORVU6Hr1G058930.19 , HORVU6Hr1G058930.18 , HORVU6Hr1G058930.11 , HORVU6Hr1G058930.10 , HORVU6Hr1G058930.13 , HORVU6Hr1G058930.12 , HORVU6Hr1G058930.15 , HORVU6Hr1G058930.14 , HORVU6Hr1G058930.17 , HORVU6Hr1G058930.16 , HORVU6Hr1G014300.1
Wheat TraesCS2D02G376100 , TraesCS5D02G185400 , TraesCS6B02G398000 , TraesCS2A02G198500 , TraesCS6B02G259000 , TraesCS2B02G605900 , TraesCS5B02G332500 , TraesCS2D02G206300 , TraesCS6B02G279200 , TraesCS6D02G227500 , TraesCS6D02G212900 , TraesCS5B02G178700 , TraesCS2D02G404800 , TraesCS2B02G425600 , TraesCS5D02G112500 , TraesCS5A02G181000 , TraesCS2D02G376000 , TraesCS2D02G376000 , TraesCS5A02G100000 , TraesCS2A02G379900 , TraesCS5D02G338200 , TraesCS2D02G404800 , TraesCS2B02G396700 , TraesCS2B02G396700 , TraesCS5A02G332300 , TraesCS6A02G222100 , TraesCS6A02G245100 , TraesCS2B02G396800 , TraesCS2B02G225900 , TraesCS2A02G407700 , TraesCS2A02G407700 , TraesCS2B02G077700 , TraesCS2A02G065700 , TraesCS2D02G063900 , TraesCS2A02G379800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
2 Sobic.002G329200 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.006G170600 tonoplast intrinsic protein("PubMedID : 26759170,PubMedID : 24597475")@aquaporin protein, putative, expressed K09873: aquaporin TIP
4 Sobic.004G180700 expressed protein -
5 Sobic.001G300500 expansin precursor, putative, expressed -
6 Sobic.002G085900 expressed protein -
7 Sobic.006G235200 expressed protein -
8 Sobic.006G202600 Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
9 Sobic.006G050800 expressed protein -
10 Sobic.010G196000 DNA binding protein, putative, expressed -
11 Sobic.003G414700 DUF567 domain containing protein, putative, expressed -
12 Sobic.006G225500 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.004G301600 integral membrane protein, putative, expressed -
14 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.005G067500 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
16 Sobic.006G172550 - -
17 Sobic.001G318300 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.001G393000 expressed protein -
19 Sobic.003G399600 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.002G301900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G222000 Sobic004G222000 Sobic004G295100 Sobic004G295100 Sobic004G222000--Sobic004G295100 Sobic002G329200 Sobic002G329200 Sobic004G222000--Sobic002G329200 Sobic006G170600 Sobic006G170600 Sobic004G222000--Sobic006G170600 Sobic004G180700 Sobic004G180700 Sobic004G222000--Sobic004G180700 Sobic001G300500 Sobic001G300500 Sobic004G222000--Sobic001G300500 Sobic002G085900 Sobic002G085900 Sobic004G222000--Sobic002G085900 Sobic006G235200 Sobic006G235200 Sobic004G222000--Sobic006G235200 Sobic006G202600 Sobic006G202600 Sobic004G222000--Sobic006G202600 Sobic006G050800 Sobic006G050800 Sobic004G222000--Sobic006G050800 Sobic010G196000 Sobic010G196000 Sobic004G295100--Sobic010G196000 Sobic004G297900 Sobic004G297900 Sobic004G295100--Sobic004G297900 Sobic008G009400 Sobic008G009400 Sobic004G295100--Sobic008G009400 Sobic004G295100--Sobic006G202600 Sobic001G330300 Sobic001G330300 Sobic004G295100--Sobic001G330300 Sobic003G311800 Sobic003G311800 Sobic004G295100--Sobic003G311800 Sobic004G295100--Sobic006G235200 Sobic004G295100--Sobic001G300500 Sobic007G090469 Sobic007G090469 Sobic004G295100--Sobic007G090469 Sobic001G318300 Sobic001G318300 Sobic002G329200--Sobic001G318300 Sobic003G132400 Sobic003G132400 Sobic002G329200--Sobic003G132400 Sobic002G329200--Sobic006G170600 Sobic006G150100 Sobic006G150100 Sobic002G329200--Sobic006G150100 Sobic003G059000 Sobic003G059000 Sobic002G329200--Sobic003G059000 Sobic002G003700 Sobic002G003700 Sobic002G329200--Sobic002G003700 Sobic003G399600 Sobic003G399600 Sobic002G329200--Sobic003G399600 Sobic002G329200--Sobic002G085900 Sobic006G225500 Sobic006G225500 Sobic002G329200--Sobic006G225500 Sobic006G170600--Sobic006G150100 Sobic006G170600--Sobic002G003700 Sobic006G170600--Sobic006G202600 Sobic004G301600 Sobic004G301600 Sobic006G170600--Sobic004G301600 Sobic006G170600--Sobic004G180700 Sobic006G170600--Sobic006G225500 Sobic003G400900 Sobic003G400900 Sobic006G170600--Sobic003G400900 Sobic006G170600--Sobic002G329200 Sobic001G237800 Sobic001G237800 Sobic006G170600--Sobic001G237800 Sobic004G180700--Sobic004G301600 Sobic002G105300 Sobic002G105300 Sobic004G180700--Sobic002G105300 Sobic004G180700--Sobic006G202600 Sobic004G180700--Sobic006G050800 Sobic004G180700--Sobic006G170600 Sobic004G180700--Sobic010G196000 Sobic004G180700--Sobic004G295100 Sobic002G301900 Sobic002G301900 Sobic004G180700--Sobic002G301900 Sobic005G163800 Sobic005G163800 Sobic004G180700--Sobic005G163800 Sobic001G300500--Sobic004G297900 Sobic001G300500--Sobic003G311800 Sobic001G300500--Sobic004G295100 Sobic001G300500--Sobic007G090469 Sobic006G172550 Sobic006G172550 Sobic001G300500--Sobic006G172550 Sobic001G300500--Sobic006G235200 Sobic001G238300 Sobic001G238300 Sobic001G300500--Sobic001G238300 Sobic006G172601 Sobic006G172601 Sobic001G300500--Sobic006G172601 SobicK026900 SobicK026900 Sobic001G300500--SobicK026900 Sobic002G085900--Sobic006G225500 Sobic006G172500 Sobic006G172500 Sobic002G085900--Sobic006G172500 Sobic002G085900--Sobic003G399600 Sobic002G085900--Sobic006G172550 Sobic002G085900--Sobic002G329200 Sobic007G090460 Sobic007G090460 Sobic002G085900--Sobic007G090460 Sobic002G085900--Sobic006G235200 Sobic003G121100 Sobic003G121100 Sobic002G085900--Sobic003G121100 Sobic002G183700 Sobic002G183700 Sobic002G085900--Sobic002G183700 Sobic006G235200--Sobic004G297900 Sobic006G235200--Sobic004G295100 Sobic006G235200--Sobic008G009400 Sobic006G235200--Sobic001G300500 Sobic006G235200--Sobic003G311800 Sobic003G299300 Sobic003G299300 Sobic006G235200--Sobic003G299300 Sobic006G235200--Sobic006G172550 Sobic006G235200--Sobic002G183700 Sobic002G092600 Sobic002G092600 Sobic006G235200--Sobic002G092600 Sobic006G202600--Sobic004G180700 Sobic006G202600--Sobic010G196000 Sobic006G202600--Sobic004G295100 Sobic006G202600--Sobic006G170600 Sobic006G202600--Sobic004G301600 Sobic006G202600--SobicK026900 Sobic006G202600--Sobic006G050800 Sobic001G508532 Sobic001G508532 Sobic006G202600--Sobic001G508532 Sobic006G202600--Sobic007G090469 Sobic006G050800--Sobic004G180700 Sobic006G050800--Sobic010G196000 Sobic006G050800--Sobic001G330300 Sobic006G050800--Sobic006G202600 Sobic006G050800--Sobic004G295100 Sobic006G050800--Sobic004G301600 Sobic006G050800--Sobic002G301900 Sobic003G136200 Sobic003G136200 Sobic006G050800--Sobic003G136200 Sobic010G009900 Sobic010G009900 Sobic006G050800--Sobic010G009900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.