Gene annotation
Transcriptome id Sobic.004G257500.1
Synonym ATUBC11, UBC11
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A194YRP9
Pfam PF00179
Panther DB PTHR24068 PTHR24068:SF58
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08690 : ubiquitin-conjugating enzyme 11
RAP-DB (Rice) LOC_Os09g12230.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G338500 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
2 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
3 Sobic.003G412200 inducer of CBF expression 2, putative, expressed -
4 Sobic.001G041400 PAPA-1-like conserved region family protein, expressed -
5 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
6 Sobic.002G016900 OsFBD13 - F-box and FBD domain containing protein, expressed -
7 Sobic.004G114000 clathrin adaptor complex small chain domain containing protein, expressed -
8 Sobic.001G330600 NAD dependent epimerase/dehydratase family protein, putative, expressed -
9 Sobic.001G042800 nudix hydrolase homolog 16(PubMedID : 26465154)@nudix hydrolase homolog 16(PubMedID : 26465154)@hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
10 Sobic.002G147500 early fruit mRNA, putative, expressed -
11 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
12 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
13 Sobic.003G230500 "Sh2(Ortholog in maize:Jiang et al., 2013a)"(PubMedID : 31659869)@glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed K00975: glucose-1-phosphate adenylyltransferase
14 Sobic.005G052100 expressed protein -
15 Sobic.001G112350 - -
16 Sobic.009G013200 - -
17 Sobic.001G130700 domain of unknown function DUF966 domain containing protein, expressed -
18 Sobic.004G090200 OsFBX46 - F-box domain containing protein, expressed -
19 Sobic.004G176700 ACT domain containing protein, putative, expressed -
20 Sobic.007G069800 expressed protein -


Gene co-expression network
sample Sobic004G257500 Sobic004G257500 Sobic004G338500 Sobic004G338500 Sobic004G257500--Sobic004G338500 Sobic006G203200 Sobic006G203200 Sobic004G257500--Sobic006G203200 Sobic003G412200 Sobic003G412200 Sobic004G257500--Sobic003G412200 Sobic001G041400 Sobic001G041400 Sobic004G257500--Sobic001G041400 Sobic002G253600 Sobic002G253600 Sobic004G257500--Sobic002G253600 Sobic002G016900 Sobic002G016900 Sobic004G257500--Sobic002G016900 Sobic004G114000 Sobic004G114000 Sobic004G257500--Sobic004G114000 Sobic001G330600 Sobic001G330600 Sobic004G257500--Sobic001G330600 Sobic001G042800 Sobic001G042800 Sobic004G257500--Sobic001G042800 Sobic002G286800 Sobic002G286800 Sobic004G338500--Sobic002G286800 Sobic005G131800 Sobic005G131800 Sobic004G338500--Sobic005G131800 Sobic006G161300 Sobic006G161300 Sobic004G338500--Sobic006G161300 Sobic008G064100 Sobic008G064100 Sobic004G338500--Sobic008G064100 Sobic005G035500 Sobic005G035500 Sobic004G338500--Sobic005G035500 Sobic005G098700 Sobic005G098700 Sobic004G338500--Sobic005G098700 Sobic004G338500--Sobic002G016900 Sobic008G082300 Sobic008G082300 Sobic004G338500--Sobic008G082300 Sobic007G025100 Sobic007G025100 Sobic004G338500--Sobic007G025100 Sobic006G203200--Sobic002G016900 Sobic003G244700 Sobic003G244700 Sobic006G203200--Sobic003G244700 Sobic006G203200--Sobic002G253600 Sobic006G120400 Sobic006G120400 Sobic006G203200--Sobic006G120400 Sobic002G341100 Sobic002G341100 Sobic006G203200--Sobic002G341100 Sobic001G130700 Sobic001G130700 Sobic006G203200--Sobic001G130700 Sobic008G156200 Sobic008G156200 Sobic006G203200--Sobic008G156200 Sobic009G242800 Sobic009G242800 Sobic006G203200--Sobic009G242800 Sobic002G002500 Sobic002G002500 Sobic006G203200--Sobic002G002500 Sobic003G230500 Sobic003G230500 Sobic003G412200--Sobic003G230500 Sobic007G147300 Sobic007G147300 Sobic003G412200--Sobic007G147300 Sobic007G122932 Sobic007G122932 Sobic003G412200--Sobic007G122932 Sobic009G021300 Sobic009G021300 Sobic003G412200--Sobic009G021300 Sobic008G001700 Sobic008G001700 Sobic003G412200--Sobic008G001700 Sobic008G071900 Sobic008G071900 Sobic003G412200--Sobic008G071900 Sobic007G123000 Sobic007G123000 Sobic003G412200--Sobic007G123000 Sobic005G001500 Sobic005G001500 Sobic003G412200--Sobic005G001500 Sobic009G086800 Sobic009G086800 Sobic003G412200--Sobic009G086800 Sobic007G078300 Sobic007G078300 Sobic001G041400--Sobic007G078300 Sobic001G041400--Sobic002G341100 Sobic001G033400 Sobic001G033400 Sobic001G041400--Sobic001G033400 Sobic001G041400--Sobic001G042800 Sobic003G022200 Sobic003G022200 Sobic001G041400--Sobic003G022200 Sobic004G329800 Sobic004G329800 Sobic001G041400--Sobic004G329800 Sobic003G035500 Sobic003G035500 Sobic001G041400--Sobic003G035500 Sobic010G152200 Sobic010G152200 Sobic001G041400--Sobic010G152200 Sobic002G067800 Sobic002G067800 Sobic001G041400--Sobic002G067800 Sobic005G072400 Sobic005G072400 Sobic002G253600--Sobic005G072400 Sobic002G253600--Sobic002G016900 Sobic002G253600--Sobic003G244700 Sobic009G126800 Sobic009G126800 Sobic002G253600--Sobic009G126800 Sobic002G253600--Sobic006G203200 Sobic002G253600--Sobic008G156200 Sobic006G278200 Sobic006G278200 Sobic002G253600--Sobic006G278200 Sobic002G253600--Sobic003G022200 Sobic003G415100 Sobic003G415100 Sobic002G253600--Sobic003G415100 Sobic002G059866 Sobic002G059866 Sobic002G016900--Sobic002G059866 Sobic002G016900--Sobic006G203200 Sobic002G016900--Sobic002G253600 Sobic002G016900--Sobic008G156200 Sobic003G174200 Sobic003G174200 Sobic002G016900--Sobic003G174200 Sobic010G270800 Sobic010G270800 Sobic002G016900--Sobic010G270800 Sobic002G016900--Sobic003G022200 Sobic002G016900--Sobic003G244700 Sobic002G016900--Sobic003G035500 Sobic002G019600 Sobic002G019600 Sobic004G114000--Sobic002G019600 Sobic004G114000--Sobic002G016900 Sobic007G043500 Sobic007G043500 Sobic004G114000--Sobic007G043500 Sobic006G067200 Sobic006G067200 Sobic004G114000--Sobic006G067200 Sobic006G039900 Sobic006G039900 Sobic004G114000--Sobic006G039900 Sobic008G073000 Sobic008G073000 Sobic004G114000--Sobic008G073000 Sobic002G045400 Sobic002G045400 Sobic004G114000--Sobic002G045400 Sobic004G114000--Sobic003G244700 Sobic004G114000--Sobic002G067800 Sobic002G147500 Sobic002G147500 Sobic001G330600--Sobic002G147500 Sobic009G013200 Sobic009G013200 Sobic001G330600--Sobic009G013200 Sobic001G330600--Sobic007G122932 Sobic001G330600--Sobic007G147300 Sobic001G330600--Sobic007G123000 Sobic005G075000 Sobic005G075000 Sobic001G330600--Sobic005G075000 Sobic006G279000 Sobic006G279000 Sobic001G330600--Sobic006G279000 Sobic010G209300 Sobic010G209300 Sobic001G330600--Sobic010G209300 Sobic001G330600--Sobic009G021300 Sobic002G127700 Sobic002G127700 Sobic001G042800--Sobic002G127700 Sobic002G291132 Sobic002G291132 Sobic001G042800--Sobic002G291132 Sobic009G061800 Sobic009G061800 Sobic001G042800--Sobic009G061800 Sobic001G042800--Sobic009G086800 Sobic001G259300 Sobic001G259300 Sobic001G042800--Sobic001G259300 Sobic003G350900 Sobic003G350900 Sobic001G042800--Sobic003G350900 Sobic005G188000 Sobic005G188000 Sobic001G042800--Sobic005G188000 Sobic009G022700 Sobic009G022700 Sobic001G042800--Sobic009G022700 Sobic002G211501 Sobic002G211501 Sobic001G042800--Sobic002G211501
Octagon: transcription factors


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