Gene annotation
Transcriptome id Sobic.004G114000.4,Sobic.004G114000.3,Sobic.004G114000.2
Synonym AP19
Functional annotation clathrin adaptor complex small chain domain containing protein, expressed
UniProt A0A1Z5RM24 , A0A1Z5RMB2
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17380 : associated protein 19
RAP-DB (Rice) LOC_Os03g57040.1 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008438
Brachypodium -
Barley -
Wheat TraesCS5D02G430000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G019600 OsFBX234 - F-box domain containing protein, expressed -
2 Sobic.002G016900 OsFBD13 - F-box and FBD domain containing protein, expressed -
3 Sobic.007G043500 DNA topoisomerase 1, putative, expressed K03163: DNA topoisomerase I
4 Sobic.006G067200 - -
5 Sobic.006G039900 - -
6 Sobic.008G073000 expressed protein -
7 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
9 Sobic.002G067800 - -
10 Sobic.002G253600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.002G050600 mla1, putative, expressed -
12 Sobic.010G235500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
13 Sobic.001G527700 CAMK_CAMK_like_ULKh_APGy.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
14 Sobic.003G435600 CBS domain-containing protein, putative, expressed -
15 Sobic.008G165100 G-patch domain containing protein, putative, expressed K13103: tuftelin-interacting protein 11
16 Sobic.006G203200 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
17 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
18 Sobic.007G018700 kinesin motor domain containing protein, putative, expressed -
19 Sobic.003G038100 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
20 Sobic.006G161000 CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07359: calcium/calmodulin-dependent protein kinase kinase 2


Gene co-expression network
sample Sobic004G114000 Sobic004G114000 Sobic002G019600 Sobic002G019600 Sobic004G114000--Sobic002G019600 Sobic002G016900 Sobic002G016900 Sobic004G114000--Sobic002G016900 Sobic007G043500 Sobic007G043500 Sobic004G114000--Sobic007G043500 Sobic006G067200 Sobic006G067200 Sobic004G114000--Sobic006G067200 Sobic006G039900 Sobic006G039900 Sobic004G114000--Sobic006G039900 Sobic008G073000 Sobic008G073000 Sobic004G114000--Sobic008G073000 Sobic002G045400 Sobic002G045400 Sobic004G114000--Sobic002G045400 Sobic003G244700 Sobic003G244700 Sobic004G114000--Sobic003G244700 Sobic002G067800 Sobic002G067800 Sobic004G114000--Sobic002G067800 Sobic004G005400 Sobic004G005400 Sobic002G019600--Sobic004G005400 Sobic002G019600--Sobic003G244700 Sobic002G062300 Sobic002G062300 Sobic002G019600--Sobic002G062300 Sobic001G261480 Sobic001G261480 Sobic002G019600--Sobic001G261480 Sobic005G139800 Sobic005G139800 Sobic002G019600--Sobic005G139800 Sobic003G031750 Sobic003G031750 Sobic002G019600--Sobic003G031750 Sobic005G117801 Sobic005G117801 Sobic002G019600--Sobic005G117801 Sobic009G209800 Sobic009G209800 Sobic002G019600--Sobic009G209800 Sobic008G079100 Sobic008G079100 Sobic002G019600--Sobic008G079100 Sobic002G059866 Sobic002G059866 Sobic002G016900--Sobic002G059866 Sobic006G203200 Sobic006G203200 Sobic002G016900--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic002G016900--Sobic002G253600 Sobic008G156200 Sobic008G156200 Sobic002G016900--Sobic008G156200 Sobic003G174200 Sobic003G174200 Sobic002G016900--Sobic003G174200 Sobic010G270800 Sobic010G270800 Sobic002G016900--Sobic010G270800 Sobic003G022200 Sobic003G022200 Sobic002G016900--Sobic003G022200 Sobic002G016900--Sobic003G244700 Sobic003G035500 Sobic003G035500 Sobic002G016900--Sobic003G035500 Sobic005G059100 Sobic005G059100 Sobic007G043500--Sobic005G059100 Sobic002G159200 Sobic002G159200 Sobic007G043500--Sobic002G159200 Sobic006G123900 Sobic006G123900 Sobic007G043500--Sobic006G123900 Sobic007G043500--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic007G043500--Sobic010G194700 Sobic001G405300 Sobic001G405300 Sobic007G043500--Sobic001G405300 Sobic007G043500--Sobic008G073000 Sobic006G080300 Sobic006G080300 Sobic007G043500--Sobic006G080300 Sobic008G106000 Sobic008G106000 Sobic007G043500--Sobic008G106000 Sobic001G228700 Sobic001G228700 Sobic006G067200--Sobic001G228700 Sobic006G067200--Sobic006G039900 Sobic008G165100 Sobic008G165100 Sobic006G067200--Sobic008G165100 Sobic001G426900 Sobic001G426900 Sobic006G067200--Sobic001G426900 Sobic009G137900 Sobic009G137900 Sobic006G067200--Sobic009G137900 Sobic006G067200--Sobic002G067800 Sobic001G425000 Sobic001G425000 Sobic006G067200--Sobic001G425000 Sobic001G202266 Sobic001G202266 Sobic006G067200--Sobic001G202266 Sobic007G002900 Sobic007G002900 Sobic006G067200--Sobic007G002900 Sobic001G303675 Sobic001G303675 Sobic006G039900--Sobic001G303675 Sobic001G454301 Sobic001G454301 Sobic006G039900--Sobic001G454301 Sobic003G435600 Sobic003G435600 Sobic006G039900--Sobic003G435600 Sobic005G077400 Sobic005G077400 Sobic006G039900--Sobic005G077400 Sobic006G076300 Sobic006G076300 Sobic006G039900--Sobic006G076300 Sobic006G039900--Sobic001G228700 Sobic004G169501 Sobic004G169501 Sobic006G039900--Sobic004G169501 Sobic001G543900 Sobic001G543900 Sobic006G039900--Sobic001G543900 Sobic006G262200 Sobic006G262200 Sobic006G039900--Sobic006G262200 Sobic005G030300 Sobic005G030300 Sobic008G073000--Sobic005G030300 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G101800 Sobic008G101800 Sobic008G073000--Sobic008G101800 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G073000--Sobic008G165100 Sobic010G174800 Sobic010G174800 Sobic008G073000--Sobic010G174800 Sobic008G073000--Sobic002G067800 Sobic002G045400--Sobic008G073000 Sobic003G355000 Sobic003G355000 Sobic002G045400--Sobic003G355000 Sobic003G433500 Sobic003G433500 Sobic002G045400--Sobic003G433500 Sobic008G174300 Sobic008G174300 Sobic002G045400--Sobic008G174300 Sobic002G045400--Sobic008G101800 Sobic009G198100 Sobic009G198100 Sobic002G045400--Sobic009G198100 Sobic009G216000 Sobic009G216000 Sobic002G045400--Sobic009G216000 Sobic010G202600 Sobic010G202600 Sobic002G045400--Sobic010G202600 Sobic002G045400--Sobic005G030300 Sobic003G244700--Sobic006G203200 Sobic003G244700--Sobic002G253600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic002G067800--Sobic010G194700 Sobic002G067800--Sobic008G165100 Sobic002G067800--Sobic005G059100 Sobic002G067800--Sobic002G095700 Sobic002G067800--Sobic008G073000 Sobic002G067800--Sobic002G159200 Sobic002G067800--Sobic003G355000 Sobic002G067800--Sobic007G043500 Sobic002G067800--Sobic006G123900
Octagon: transcription factors


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