Gene annotation
Transcriptome id Sobic.004G277800.6,Sobic.004G277800.9,Sobic.004G277800.4,Sobic.004G277800.11,Sobic.004G277800.10,Sobic.004G277800.8,Sobic.004G277800.7,Sobic.004G277800.2,Sobic.004G277800.5,Sobic.004G277800.3
Synonym ATARFA1E, ARFA1E, Sb04g031485
Functional annotation ADP-ribosylation factor, putative, expressed
UniProt A0A1Z5RPB6 , A0A194YRX2 , A0A1Z5RPH9
Pfam PF09439 PF08477 PF00025
Panther DB PTHR11711 PTHR11711:SF206
NCBI CDD KOG0072; GTP-binding ADP-ribosylation factor-like protein ARL1 KOG0070GTP-binding ADP-ribosylation factor Arf1
KEGG Orthology K07937; ADP-ribosylation factor 1/2
Gene Ontology GO:0005525; GTP binding GO:0007264small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT3G62290 : ADP-ribosylation factor A1E
RAP-DB (Rice) LOC_Os07g12170.1 : ADP-ribosylation factor, putative, expressed
MaizeGDB (Corn) Zm00025a021572
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
2 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
3 Sobic.002G238700 - -
4 Sobic.005G115300 expressed protein -
5 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
6 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
8 Sobic.001G464300 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.004G126500 - -
11 Sobic.008G084900 D-mannose binding lectin family protein, expressed -
12 Sobic.005G175900 expressed protein -
13 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
14 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
15 Sobic.001G506600 exostosin family domain containing protein, expressed -
16 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.006G196400 U-box, putative, expressed -
18 Sobic.005G216500 plant protein of unknown function domain containing protein, expressed -
19 Sobic.010G115000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@limonoid UDP-glucosyltransferase, putative, expressed -
20 Sobic.001G261448 - -


Gene co-expression network
sample Sobic004G277800 Sobic004G277800 Sobic001G348800 Sobic001G348800 Sobic004G277800--Sobic001G348800 Sobic004G248500 Sobic004G248500 Sobic004G277800--Sobic004G248500 Sobic002G238700 Sobic002G238700 Sobic004G277800--Sobic002G238700 Sobic005G115300 Sobic005G115300 Sobic004G277800--Sobic005G115300 Sobic004G312200 Sobic004G312200 Sobic004G277800--Sobic004G312200 Sobic005G104200 Sobic005G104200 Sobic004G277800--Sobic005G104200 Sobic001G238500 Sobic001G238500 Sobic004G277800--Sobic001G238500 Sobic001G464300 Sobic001G464300 Sobic004G277800--Sobic001G464300 Sobic002G003400 Sobic002G003400 Sobic004G277800--Sobic002G003400 Sobic001G348800--Sobic005G104200 Sobic001G348800--Sobic005G115300 Sobic001G348800--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic001G348800--Sobic004G126500 Sobic001G348800--Sobic002G238700 Sobic001G503000 Sobic001G503000 Sobic001G348800--Sobic001G503000 Sobic001G348800--Sobic004G248500 Sobic002G019100 Sobic002G019100 Sobic001G348800--Sobic002G019100 Sobic006G009700 Sobic006G009700 Sobic001G348800--Sobic006G009700 Sobic004G248500--Sobic005G115300 Sobic004G248500--Sobic001G503000 Sobic004G248500--Sobic001G464300 Sobic007G109600 Sobic007G109600 Sobic004G248500--Sobic007G109600 Sobic004G248500--Sobic004G312200 Sobic004G248500--Sobic001G348800 Sobic006G183900 Sobic006G183900 Sobic004G248500--Sobic006G183900 Sobic004G248500--Sobic005G104200 Sobic001G263300 Sobic001G263300 Sobic004G248500--Sobic001G263300 Sobic002G238700--Sobic006G009700 Sobic002G238700--Sobic001G238500 Sobic005G066500 Sobic005G066500 Sobic002G238700--Sobic005G066500 Sobic008G084900 Sobic008G084900 Sobic002G238700--Sobic008G084900 Sobic002G238700--Sobic004G126500 Sobic005G065700 Sobic005G065700 Sobic002G238700--Sobic005G065700 Sobic005G071900 Sobic005G071900 Sobic002G238700--Sobic005G071900 Sobic008G138700 Sobic008G138700 Sobic002G238700--Sobic008G138700 Sobic002G238700--Sobic005G104200 Sobic005G115300--Sobic001G503000 Sobic005G115300--Sobic004G312200 Sobic005G115300--Sobic004G248500 Sobic005G115300--Sobic005G104200 Sobic001G506600 Sobic001G506600 Sobic005G115300--Sobic001G506600 Sobic006G229100 Sobic006G229100 Sobic005G115300--Sobic006G229100 Sobic005G115300--Sobic001G348800 Sobic010G096700 Sobic010G096700 Sobic005G115300--Sobic010G096700 Sobic010G082000 Sobic010G082000 Sobic005G115300--Sobic010G082000 Sobic004G312200--Sobic005G115300 Sobic004G312200--Sobic001G503000 Sobic006G196400 Sobic006G196400 Sobic004G312200--Sobic006G196400 Sobic005G175900 Sobic005G175900 Sobic004G312200--Sobic005G175900 Sobic004G312200--Sobic010G082000 Sobic003G185300 Sobic003G185300 Sobic004G312200--Sobic003G185300 Sobic004G312200--Sobic001G263300 Sobic003G215300 Sobic003G215300 Sobic004G312200--Sobic003G215300 Sobic001G149400 Sobic001G149400 Sobic004G312200--Sobic001G149400 Sobic005G104200--Sobic001G238500 Sobic005G104200--Sobic001G506600 Sobic005G104200--Sobic002G019100 Sobic005G104200--Sobic001G503000 Sobic006G117500 Sobic006G117500 Sobic005G104200--Sobic006G117500 Sobic005G104200--Sobic004G126500 Sobic005G104200--Sobic006G009700 Sobic002G411000 Sobic002G411000 Sobic005G104200--Sobic002G411000 Sobic005G104200--Sobic001G348800 Sobic001G238500--Sobic004G126500 Sobic001G238500--Sobic005G104200 Sobic001G238500--Sobic006G009700 Sobic001G238500--Sobic002G238700 Sobic001G238500--Sobic002G019100 Sobic001G238500--Sobic001G348800 Sobic001G238500--Sobic002G411000 Sobic009G015166 Sobic009G015166 Sobic001G238500--Sobic009G015166 Sobic001G506700 Sobic001G506700 Sobic001G238500--Sobic001G506700 Sobic001G212451 Sobic001G212451 Sobic001G464300--Sobic001G212451 Sobic002G391200 Sobic002G391200 Sobic001G464300--Sobic002G391200 Sobic001G464300--Sobic004G248500 Sobic001G173700 Sobic001G173700 Sobic001G464300--Sobic001G173700 Sobic010G021700 Sobic010G021700 Sobic001G464300--Sobic010G021700 Sobic002G082700 Sobic002G082700 Sobic001G464300--Sobic002G082700 Sobic001G464300--Sobic005G104200 Sobic001G464300--Sobic001G348800 Sobic001G301400 Sobic001G301400 Sobic001G464300--Sobic001G301400 Sobic002G003400--Sobic005G175900 Sobic001G232000 Sobic001G232000 Sobic002G003400--Sobic001G232000 Sobic002G003400--Sobic006G196400 Sobic002G115600 Sobic002G115600 Sobic002G003400--Sobic002G115600 Sobic007G090600 Sobic007G090600 Sobic002G003400--Sobic007G090600 Sobic009G060700 Sobic009G060700 Sobic002G003400--Sobic009G060700 Sobic002G003400--Sobic001G263300 Sobic004G008600 Sobic004G008600 Sobic002G003400--Sobic004G008600 Sobic002G118900 Sobic002G118900 Sobic002G003400--Sobic002G118900
Octagon: transcription factors


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