Gene annotation
Transcriptome id Sobic.005G126800.1
Synonym Sb05g018880, LCB2
Functional annotation serine palmitoyltransferase 2, putative, expressed
UniProt C5Y2S7
Pfam PF00155
Panther DB PTHR13693 PTHR13693:SF62
NCBI CDD -
KEGG Orthology K00654; serine palmitoyltransferase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G23670 : long chain base2
RAP-DB (Rice) LOC_Os11g31640.1 : serine palmitoyltransferase 2, putative, expressed
MaizeGDB (Corn) Zm00025a029791 , Zm00025a029793 , Zm00025a015659 , Zm00025a029487 , Zm00025a056608 , Zm00025a014897 , Zm00025a056607 , Zm00025a039217 , Zm00025a042671 , Zm00025a001988
Brachypodium KQJ88450
Barley HORVU3Hr1G096620.3 , HORVU3Hr1G096620.6 , HORVU3Hr1G096620.7 , HORVU3Hr1G096620.4 , HORVU3Hr1G096620.5 , HORVU3Hr1G096620.2 , HORVU3Hr1G096620.1 , HORVU3Hr1G096620.8 , HORVU3Hr1G096620.9 , HORVU3Hr1G096620.10 , HORVU3Hr1G096620.11
Wheat TraesCS3B02G477100 , TraesCS3B02G477100 , TraesCS3D02G435900
Populus -


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cDNA sequences
Sobic.005G126800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G394600 expressed protein -
2 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
3 Sobic.001G413900 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
4 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
5 Sobic.007G137000 lipoate protein ligase, putative, expressed -
6 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
7 Sobic.006G114500 per1-like family protein, putative, expressed -
8 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
9 Sobic.004G002400 expressed protein -
10 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
11 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
12 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
13 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
14 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
15 Sobic.002G398100 RGH1A, putative, expressed -
16 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
17 Sobic.001G369000 adapitin protein, putative, expressed K12392: AP-1 complex subunit beta-1
18 Sobic.004G135400 expressed protein -
19 Sobic.006G056200 transport protein particle component, Bet3, domain containing protein, expressed -
20 Sobic.003G400100 leaf senescence related protein, putative, expressed -


Gene co-expression network
sample Sobic005G126800 Sobic005G126800 Sobic001G394600 Sobic001G394600 Sobic005G126800--Sobic001G394600 Sobic002G361300 Sobic002G361300 Sobic005G126800--Sobic002G361300 Sobic001G413900 Sobic001G413900 Sobic005G126800--Sobic001G413900 Sobic010G002400 Sobic010G002400 Sobic005G126800--Sobic010G002400 Sobic007G137000 Sobic007G137000 Sobic005G126800--Sobic007G137000 Sobic009G224000 Sobic009G224000 Sobic005G126800--Sobic009G224000 Sobic006G114500 Sobic006G114500 Sobic005G126800--Sobic006G114500 Sobic004G339100 Sobic004G339100 Sobic005G126800--Sobic004G339100 Sobic004G002400 Sobic004G002400 Sobic005G126800--Sobic004G002400 Sobic001G394600--Sobic002G361300 Sobic001G120300 Sobic001G120300 Sobic001G394600--Sobic001G120300 Sobic001G394600--Sobic006G114500 Sobic001G394600--Sobic004G339100 Sobic010G205800 Sobic010G205800 Sobic001G394600--Sobic010G205800 Sobic001G201400 Sobic001G201400 Sobic001G394600--Sobic001G201400 Sobic007G024700 Sobic007G024700 Sobic001G394600--Sobic007G024700 Sobic001G000200 Sobic001G000200 Sobic001G394600--Sobic001G000200 Sobic004G158700 Sobic004G158700 Sobic001G394600--Sobic004G158700 Sobic002G361300--Sobic001G394600 Sobic009G257200 Sobic009G257200 Sobic002G361300--Sobic009G257200 Sobic002G361300--Sobic010G205800 Sobic001G127000 Sobic001G127000 Sobic002G361300--Sobic001G127000 Sobic007G120500 Sobic007G120500 Sobic002G361300--Sobic007G120500 Sobic002G361300--Sobic009G224000 Sobic001G114000 Sobic001G114000 Sobic002G361300--Sobic001G114000 Sobic004G039600 Sobic004G039600 Sobic002G361300--Sobic004G039600 Sobic004G358600 Sobic004G358600 Sobic002G361300--Sobic004G358600 Sobic001G534800 Sobic001G534800 Sobic001G413900--Sobic001G534800 Sobic002G156000 Sobic002G156000 Sobic001G413900--Sobic002G156000 Sobic001G281100 Sobic001G281100 Sobic001G413900--Sobic001G281100 Sobic004G002100 Sobic004G002100 Sobic001G413900--Sobic004G002100 Sobic004G236200 Sobic004G236200 Sobic001G413900--Sobic004G236200 Sobic004G209800 Sobic004G209800 Sobic001G413900--Sobic004G209800 Sobic001G065000 Sobic001G065000 Sobic001G413900--Sobic001G065000 Sobic001G056800 Sobic001G056800 Sobic001G413900--Sobic001G056800 Sobic003G229500 Sobic003G229500 Sobic001G413900--Sobic003G229500 Sobic003G338500 Sobic003G338500 Sobic010G002400--Sobic003G338500 Sobic004G275700 Sobic004G275700 Sobic010G002400--Sobic004G275700 Sobic001G201500 Sobic001G201500 Sobic010G002400--Sobic001G201500 Sobic010G193900 Sobic010G193900 Sobic010G002400--Sobic010G193900 Sobic005G155700 Sobic005G155700 Sobic010G002400--Sobic005G155700 Sobic010G223300 Sobic010G223300 Sobic010G002400--Sobic010G223300 Sobic002G308500 Sobic002G308500 Sobic010G002400--Sobic002G308500 Sobic003G012200 Sobic003G012200 Sobic010G002400--Sobic003G012200 Sobic006G176600 Sobic006G176600 Sobic010G002400--Sobic006G176600 Sobic001G520300 Sobic001G520300 Sobic007G137000--Sobic001G520300 Sobic002G405500 Sobic002G405500 Sobic007G137000--Sobic002G405500 Sobic006G056200 Sobic006G056200 Sobic007G137000--Sobic006G056200 Sobic008G103300 Sobic008G103300 Sobic007G137000--Sobic008G103300 Sobic002G075900 Sobic002G075900 Sobic007G137000--Sobic002G075900 Sobic010G219000 Sobic010G219000 Sobic007G137000--Sobic010G219000 Sobic007G137000--Sobic005G126800 Sobic008G129600 Sobic008G129600 Sobic007G137000--Sobic008G129600 Sobic001G474400 Sobic001G474400 Sobic007G137000--Sobic001G474400 Sobic009G224000--Sobic003G338500 Sobic010G243400 Sobic010G243400 Sobic009G224000--Sobic010G243400 Sobic007G056100 Sobic007G056100 Sobic009G224000--Sobic007G056100 Sobic009G224000--Sobic002G361300 Sobic004G130400 Sobic004G130400 Sobic009G224000--Sobic004G130400 Sobic010G261600 Sobic010G261600 Sobic009G224000--Sobic010G261600 Sobic003G394200 Sobic003G394200 Sobic009G224000--Sobic003G394200 Sobic003G270600 Sobic003G270600 Sobic009G224000--Sobic003G270600 Sobic008G173400 Sobic008G173400 Sobic009G224000--Sobic008G173400 Sobic001G142100 Sobic001G142100 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic006G114500--Sobic004G350100 Sobic004G021100 Sobic004G021100 Sobic006G114500--Sobic004G021100 Sobic006G114500--Sobic004G339100 Sobic004G205600 Sobic004G205600 Sobic006G114500--Sobic004G205600 Sobic006G114500--Sobic001G201400 Sobic001G466700 Sobic001G466700 Sobic006G114500--Sobic001G466700 Sobic009G257800 Sobic009G257800 Sobic006G114500--Sobic009G257800 Sobic004G113400 Sobic004G113400 Sobic004G339100--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic004G339100--Sobic009G010600 Sobic004G329400 Sobic004G329400 Sobic004G339100--Sobic004G329400 Sobic004G339100--Sobic007G024700 Sobic003G287100 Sobic003G287100 Sobic004G339100--Sobic003G287100 Sobic008G099800 Sobic008G099800 Sobic004G339100--Sobic008G099800 Sobic004G339100--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic004G339100--Sobic004G135400 Sobic004G277200 Sobic004G277200 Sobic004G339100--Sobic004G277200 Sobic004G002400--Sobic001G281100 Sobic004G002400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic004G002400--Sobic003G187500 Sobic007G132100 Sobic007G132100 Sobic004G002400--Sobic007G132100 Sobic006G126100 Sobic006G126100 Sobic004G002400--Sobic006G126100 Sobic001G124200 Sobic001G124200 Sobic004G002400--Sobic001G124200 Sobic004G002400--Sobic001G466700 Sobic009G249200 Sobic009G249200 Sobic004G002400--Sobic009G249200 Sobic004G002400--Sobic001G534800
Octagon: transcription factors


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