Gene annotation
Transcriptome id Sobic.005G156000.1
Synonym Sb05g021830, Ornithine decarboxylase, ODC3
Functional annotation "Decreased expression levels by drought stress, up-regulated by silicon application under drought stress " (PubMedID : 24813726)
pyridoxal-dependent decarboxylase protein, putative, expressed
UniProt C5Y4R3
Pfam PF00278 PF02784
Panther DB PTHR11482 PTHR11482:SF6
NCBI CDD KOG0622; Ornithine decarboxylase
KEGG Orthology K01581; E4.1.1.17, ODC1, speC, ornithine decarboxylase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT5G11880 : Pyridoxal-dependent decarboxylase family protein
RAP-DB (Rice) LOC_Os09g37120.1 : pyridoxal-dependent decarboxylase protein, putative, expressed
MaizeGDB (Corn) Zm00025a049288 , Zm00025a015760 , Zm00025a047826
Brachypodium KQJ91290 , KQJ91284 , PNT65044
Barley HORVU7Hr1G032100.2 , HORVU5Hr1G084750.3 , HORVU5Hr1G084750.1 , HORVU7Hr1G032100.1
Wheat TraesCS5B02G304100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G233600 glycogen operon protein glgX, putative, expressed K01214: ISA, isoamylase
2 Sobic.003G009000 harpin-induced protein, putative, expressed -
3 Sobic.010G146000 CSLD5 - cellulose synthase-like family D, expressed -
4 Sobic.002G199800 - -
5 Sobic.008G100600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
6 Sobic.007G048101 - -
7 Sobic.006G239500 plant protein of unknown function domain containing protein, expressed -
8 Sobic.009G228400 lipase-related, putative, expressed -
9 Sobic.002G330100 formin-like protein 3 precursor, putative, expressed -
10 Sobic.001G257650 - -
11 Sobic.009G098700 basic helix-loop-helix domain containing protein, expressed -
12 Sobic.004G349600 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.009G230800 Up-regulation in phyB-1 mutant(PubMedID : 26893475)@inhibiting the nuclear localization of BRASSINOSTEROID INSENSITIVE 2(PubMedID : 28273925)@decreased the cell proliferation rates(PubMedID : 27329702)@gibberellin 2-beta-dioxygenase, putative, expressed K04125: gibberellin 2beta-dioxygenase
14 Sobic.001G245400 - -
15 Sobic.004G011900 - -
16 Sobic.001G024400 pectinesterase inhibitor domain containing protein, expressed -
17 Sobic.001G183666 - -
18 Sobic.004G082800 GRAM and C2 domains containing protein, putative, expressed -
19 Sobic.001G405100 BTBT1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
20 Sobic.002G339666 - K04718: sphingosine kinase


Gene co-expression network
sample Sobic005G156000 Sobic005G156000 Sobic002G233600 Sobic002G233600 Sobic005G156000--Sobic002G233600 Sobic003G009000 Sobic003G009000 Sobic005G156000--Sobic003G009000 Sobic010G146000 Sobic010G146000 Sobic005G156000--Sobic010G146000 Sobic002G199800 Sobic002G199800 Sobic005G156000--Sobic002G199800 Sobic008G100600 Sobic008G100600 Sobic005G156000--Sobic008G100600 Sobic007G048101 Sobic007G048101 Sobic005G156000--Sobic007G048101 Sobic006G239500 Sobic006G239500 Sobic005G156000--Sobic006G239500 Sobic009G228400 Sobic009G228400 Sobic005G156000--Sobic009G228400 Sobic002G330100 Sobic002G330100 Sobic005G156000--Sobic002G330100 Sobic009G178400 Sobic009G178400 Sobic002G233600--Sobic009G178400 Sobic001G308000 Sobic001G308000 Sobic002G233600--Sobic001G308000 Sobic009G230800 Sobic009G230800 Sobic002G233600--Sobic009G230800 Sobic007G039200 Sobic007G039200 Sobic002G233600--Sobic007G039200 Sobic002G233600--Sobic007G048101 Sobic009G238650 Sobic009G238650 Sobic002G233600--Sobic009G238650 Sobic001G340800 Sobic001G340800 Sobic002G233600--Sobic001G340800 Sobic006G001100 Sobic006G001100 Sobic002G233600--Sobic006G001100 Sobic003G358600 Sobic003G358600 Sobic002G233600--Sobic003G358600 Sobic009G098700 Sobic009G098700 Sobic003G009000--Sobic009G098700 Sobic003G009000--Sobic006G239500 Sobic003G009000--Sobic002G199800 Sobic001G183666 Sobic001G183666 Sobic003G009000--Sobic001G183666 Sobic004G349600 Sobic004G349600 Sobic003G009000--Sobic004G349600 Sobic003G407700 Sobic003G407700 Sobic003G009000--Sobic003G407700 Sobic010G073900 Sobic010G073900 Sobic003G009000--Sobic010G073900 Sobic001G257650 Sobic001G257650 Sobic003G009000--Sobic001G257650 Sobic001G485700 Sobic001G485700 Sobic003G009000--Sobic001G485700 Sobic004G011900 Sobic004G011900 Sobic010G146000--Sobic004G011900 Sobic010G146000--Sobic008G100600 Sobic008G100300 Sobic008G100300 Sobic010G146000--Sobic008G100300 Sobic003G213000 Sobic003G213000 Sobic010G146000--Sobic003G213000 Sobic001G405100 Sobic001G405100 Sobic010G146000--Sobic001G405100 Sobic005G110424 Sobic005G110424 Sobic010G146000--Sobic005G110424 Sobic004G082800 Sobic004G082800 Sobic010G146000--Sobic004G082800 Sobic010G202200 Sobic010G202200 Sobic010G146000--Sobic010G202200 Sobic008G036600 Sobic008G036600 Sobic010G146000--Sobic008G036600 Sobic002G199800--Sobic006G239500 Sobic002G199800--Sobic004G349600 Sobic002G199800--Sobic003G407700 Sobic002G199800--Sobic009G238650 Sobic002G199800--Sobic010G073900 Sobic005G120400 Sobic005G120400 Sobic002G199800--Sobic005G120400 Sobic002G199800--Sobic009G098700 Sobic010G128350 Sobic010G128350 Sobic002G199800--Sobic010G128350 Sobic001G165901 Sobic001G165901 Sobic002G199800--Sobic001G165901 Sobic008G100600--Sobic005G110424 Sobic008G100600--Sobic010G202200 Sobic008G100600--Sobic010G146000 Sobic001G024400 Sobic001G024400 Sobic008G100600--Sobic001G024400 Sobic008G100600--Sobic001G405100 Sobic003G156900 Sobic003G156900 Sobic008G100600--Sobic003G156900 Sobic010G024400 Sobic010G024400 Sobic008G100600--Sobic010G024400 Sobic004G025900 Sobic004G025900 Sobic008G100600--Sobic004G025900 Sobic008G017850 Sobic008G017850 Sobic008G100600--Sobic008G017850 Sobic007G048101--Sobic009G238650 Sobic002G088600 Sobic002G088600 Sobic007G048101--Sobic002G088600 Sobic003G093100 Sobic003G093100 Sobic007G048101--Sobic003G093100 Sobic004G177900 Sobic004G177900 Sobic007G048101--Sobic004G177900 Sobic007G048101--Sobic006G239500 Sobic007G048101--Sobic004G349600 Sobic008G025400 Sobic008G025400 Sobic007G048101--Sobic008G025400 Sobic007G048101--Sobic010G073900 Sobic001G294500 Sobic001G294500 Sobic007G048101--Sobic001G294500 Sobic006G239500--Sobic002G199800 Sobic006G239500--Sobic009G238650 Sobic006G239500--Sobic004G349600 Sobic006G239500--Sobic010G073900 Sobic006G239500--Sobic003G407700 Sobic006G239500--Sobic010G128350 Sobic006G239500--Sobic005G120400 Sobic006G239500--Sobic009G098700 Sobic006G239500--Sobic007G048101 Sobic005G030700 Sobic005G030700 Sobic009G228400--Sobic005G030700 Sobic004G218300 Sobic004G218300 Sobic009G228400--Sobic004G218300 Sobic002G147100 Sobic002G147100 Sobic009G228400--Sobic002G147100 Sobic004G111600 Sobic004G111600 Sobic009G228400--Sobic004G111600 Sobic010G035801 Sobic010G035801 Sobic009G228400--Sobic010G035801 Sobic007G147400 Sobic007G147400 Sobic009G228400--Sobic007G147400 Sobic007G192400 Sobic007G192400 Sobic009G228400--Sobic007G192400 Sobic006G130200 Sobic006G130200 Sobic009G228400--Sobic006G130200 Sobic002G203600 Sobic002G203600 Sobic009G228400--Sobic002G203600 Sobic002G330100--Sobic001G257650 Sobic009G081900 Sobic009G081900 Sobic002G330100--Sobic009G081900 Sobic002G330100--Sobic003G009000 Sobic001G010500 Sobic001G010500 Sobic002G330100--Sobic001G010500 Sobic002G330100--Sobic002G199800 Sobic002G339666 Sobic002G339666 Sobic002G330100--Sobic002G339666 Sobic002G330100--Sobic003G407700 Sobic008G121501 Sobic008G121501 Sobic002G330100--Sobic008G121501 Sobic002G330100--Sobic004G349600
Octagon: transcription factors


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