Gene annotation
| Transcriptome id | Sobic.005G167400.2,Sobic.005G167400.3,Sobic.005G167400.4 |
|---|---|
| Synonym | RPS3, RPM1, Sb05g022785 |
| Functional annotation | resistance protein, putative, expressed |
| UniProt | A0A1Z5RJX1 , A0A1Z5RIZ7 |
| Pfam | PF13191 PF00931 |
| Panther DB | PTHR23155 PTHR23155:SF529 |
| NCBI CDD | KOG4658; Apoptotic ATPase |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G07040 : NB-ARC domain-containing disease resistance protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g42670.1,LOC_Os08g42670.2 : resistance protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQK08096 , PNT72119 |
| Barley | HORVU7Hr1G055790.3 , HORVU7Hr1G055790.2 , HORVU7Hr1G055790.1 , HORVU7Hr1G055790.4 , HORVU1Hr1G002850.2 , HORVU1Hr1G002850.3 |
| Wheat | TraesCS1D02G019700 , TraesCSU02G103700 , TraesCS7A02G101700 , TraesCS7A02G101700 , TraesCS4A02G400300 , TraesCS3D02G528300 , TraesCS5D02G040200 , TraesCS6B02G468800 , TraesCS1D02G021000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G353800 | protein kinase domain containing protein, expressed | - |
| 2 | Sobic.004G182700 | OsFBK8 - F-box domain and kelch repeat containing protein, expressed | - |
| 3 | Sobic.001G498300 | galactose mutarotase-like, putative, expressed | - |
| 4 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 5 | Sobic.005G167500 | resistance protein, putative, expressed | - |
| 6 | Sobic.008G036300 | Ser/Thr protein phosphatase family protein, putative, expressed | - |
| 7 | Sobic.005G192600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed | - |
| 8 | Sobic.010G094301 | - | - |
| 9 | Sobic.010G100200 | glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | - |
| 10 | Sobic.007G212400 | thylakoid lumenal 19 kDa protein, chloroplast precursor, putative, expressed | - |
| 11 | Sobic.008G080400 | "cyanogenic beta-glucosidase dhurrinase, up-regulated under drought stress "(PubMedID : 24655390)@Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed | K01188: beta-glucosidase |
| 12 | Sobic.001G198800 | -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 13 | Sobic.003G058001 | - | - |
| 14 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 15 | Sobic.001G221300 | alcohol oxidase, putative, expressed | K17756: long-chain-alcohol oxidase |
| 16 | Sobic.008G036350 | - | - |
| 17 | Sobic.001G382100 | Photosystem II repair protein PSB27-H1(PubMedID : 26186930)@Photosystem II 11 kD protein (Os)(PubMedID : 27208977)@photosystem II 11 kD protein, putative, expressed | K08902: photosystem II Psb27 protein |
| 18 | Sobic.008G080100 | Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed | K01188: beta-glucosidase |
| 19 | Sobic.001G177000 | Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08913: light-harvesting complex II chlorophyll a/b binding protein 2 |
| 20 | Sobic.008G051000 | magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed | K03405: chlI, magnesium chelatase subunit I |
Gene co-expression network
Octagon: transcription factors
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