Gene annotation
Transcriptome id Sobic.005G197800.2,Sobic.005G197800.1
Synonym Sb05g025490
Functional annotation lysM domain containing protein, putative
UniProt C5Y6Z7 , A0A1Z5RJY6
Pfam PF01476
Panther DB PTHR34997
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g57400.1 : lysM domain containing protein, putative
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G045800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@polygalacturonase, putative, expressed -
2 Sobic.007G050500 MYB family transcription factor, putative, expressed -
3 Sobic.003G075566 - -
4 Sobic.003G418300 protein kinase, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
5 Sobic.001G466400 glycosyl hydrolase family 10 protein, putative, expressed -
6 Sobic.005G025900 "domain confirmed by Pfam database, expression supported by NCBI EST database,expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
7 Sobic.002G016400 monocopper oxidase, putative, expressed -
8 Sobic.001G454800 polygalacturonase, putative, expressed -
9 Sobic.008G170400 expressed protein -
10 Sobic.002G278200 thaumatin, putative, expressed -
11 Sobic.005G098400 "domain confirmed by Pfam database, expressed in leaf and root"(PubMedID : 20499123)@OsIAA27 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
12 Sobic.002G178000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
13 Sobic.006G149300 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
14 Sobic.007G120301 - -
15 Sobic.007G111700 glutathione S-transferase, C-terminal domain containing protein, expressed -
16 Sobic.001G355900 expressed protein -
17 Sobic.009G076300 expressed protein -
18 Sobic.005G220300 OsWAK123 - OsWAK receptor-like protein kinase, expressed -
19 Sobic.001G267100 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
20 Sobic.002G283500 glutathione S-transferase, C-terminal domain containing protein, expressed -


Gene co-expression network
sample Sobic005G197800 Sobic005G197800 Sobic001G045800 Sobic001G045800 Sobic005G197800--Sobic001G045800 Sobic007G050500 Sobic007G050500 Sobic005G197800--Sobic007G050500 Sobic003G075566 Sobic003G075566 Sobic005G197800--Sobic003G075566 Sobic003G418300 Sobic003G418300 Sobic005G197800--Sobic003G418300 Sobic001G466400 Sobic001G466400 Sobic005G197800--Sobic001G466400 Sobic005G025900 Sobic005G025900 Sobic005G197800--Sobic005G025900 Sobic002G016400 Sobic002G016400 Sobic005G197800--Sobic002G016400 Sobic001G454800 Sobic001G454800 Sobic005G197800--Sobic001G454800 Sobic008G170400 Sobic008G170400 Sobic005G197800--Sobic008G170400 Sobic001G045800--Sobic005G197800 Sobic008G113900 Sobic008G113900 Sobic001G045800--Sobic008G113900 Sobic002G226500 Sobic002G226500 Sobic001G045800--Sobic002G226500 Sobic006G030200 Sobic006G030200 Sobic001G045800--Sobic006G030200 Sobic010G022500 Sobic010G022500 Sobic001G045800--Sobic010G022500 Sobic001G045800--Sobic001G466400 Sobic006G149300 Sobic006G149300 Sobic001G045800--Sobic006G149300 Sobic007G018100 Sobic007G018100 Sobic001G045800--Sobic007G018100 Sobic001G045800--Sobic003G418300 Sobic007G050500--Sobic002G016400 Sobic005G098400 Sobic005G098400 Sobic007G050500--Sobic005G098400 Sobic001G267100 Sobic001G267100 Sobic007G050500--Sobic001G267100 Sobic002G278200 Sobic002G278200 Sobic007G050500--Sobic002G278200 Sobic001G305300 Sobic001G305300 Sobic007G050500--Sobic001G305300 Sobic007G120301 Sobic007G120301 Sobic007G050500--Sobic007G120301 Sobic007G050500--Sobic005G025900 Sobic001G345200 Sobic001G345200 Sobic007G050500--Sobic001G345200 Sobic007G111700 Sobic007G111700 Sobic007G050500--Sobic007G111700 Sobic005G202800 Sobic005G202800 Sobic003G075566--Sobic005G202800 Sobic005G162400 Sobic005G162400 Sobic003G075566--Sobic005G162400 Sobic006G015300 Sobic006G015300 Sobic003G075566--Sobic006G015300 Sobic005G105700 Sobic005G105700 Sobic003G075566--Sobic005G105700 Sobic003G419200 Sobic003G419200 Sobic003G075566--Sobic003G419200 Sobic007G042600 Sobic007G042600 Sobic003G075566--Sobic007G042600 Sobic005G220300 Sobic005G220300 Sobic003G075566--Sobic005G220300 Sobic007G177400 Sobic007G177400 Sobic003G075566--Sobic007G177400 Sobic007G064500 Sobic007G064500 Sobic003G075566--Sobic007G064500 Sobic003G418300--Sobic002G016400 Sobic003G418300--Sobic005G098400 Sobic003G418300--Sobic001G345200 Sobic003G338200 Sobic003G338200 Sobic003G418300--Sobic003G338200 Sobic003G418300--Sobic008G170400 Sobic007G094200 Sobic007G094200 Sobic003G418300--Sobic007G094200 Sobic005G231400 Sobic005G231400 Sobic003G418300--Sobic005G231400 Sobic010G216600 Sobic010G216600 Sobic003G418300--Sobic010G216600 Sobic008G187400 Sobic008G187400 Sobic003G418300--Sobic008G187400 Sobic003G204300 Sobic003G204300 Sobic001G466400--Sobic003G204300 Sobic009G076300 Sobic009G076300 Sobic001G466400--Sobic009G076300 Sobic001G466400--Sobic005G197800 Sobic004G008300 Sobic004G008300 Sobic001G466400--Sobic004G008300 Sobic009G004950 Sobic009G004950 Sobic001G466400--Sobic009G004950 Sobic001G466400--Sobic001G045800 Sobic010G126800 Sobic010G126800 Sobic001G466400--Sobic010G126800 Sobic002G009100 Sobic002G009100 Sobic001G466400--Sobic002G009100 Sobic004G233700 Sobic004G233700 Sobic005G025900--Sobic004G233700 Sobic005G025900--Sobic007G050500 Sobic001G144200 Sobic001G144200 Sobic005G025900--Sobic001G144200 Sobic005G025900--Sobic007G111700 Sobic002G158900 Sobic002G158900 Sobic005G025900--Sobic002G158900 Sobic001G355900 Sobic001G355900 Sobic005G025900--Sobic001G355900 Sobic005G231300 Sobic005G231300 Sobic005G025900--Sobic005G231300 Sobic005G025900--Sobic002G016400 Sobic001G402400 Sobic001G402400 Sobic005G025900--Sobic001G402400 Sobic002G016400--Sobic005G098400 Sobic002G016400--Sobic003G418300 Sobic002G016400--Sobic007G050500 Sobic002G016400--Sobic001G305300 Sobic002G016400--Sobic001G345200 Sobic007G208100 Sobic007G208100 Sobic002G016400--Sobic007G208100 Sobic002G016400--Sobic006G149300 Sobic001G382700 Sobic001G382700 Sobic002G016400--Sobic001G382700 Sobic002G016400--Sobic008G170400 Sobic007G179000 Sobic007G179000 Sobic001G454800--Sobic007G179000 Sobic001G454800--Sobic003G418300 Sobic003G009800 Sobic003G009800 Sobic001G454800--Sobic003G009800 Sobic002G355900 Sobic002G355900 Sobic001G454800--Sobic002G355900 Sobic001G159100 Sobic001G159100 Sobic001G454800--Sobic001G159100 Sobic003G444400 Sobic003G444400 Sobic001G454800--Sobic003G444400 Sobic002G144666 Sobic002G144666 Sobic001G454800--Sobic002G144666 Sobic010G087800 Sobic010G087800 Sobic001G454800--Sobic010G087800 Sobic010G053300 Sobic010G053300 Sobic001G454800--Sobic010G053300 Sobic008G170400--Sobic007G111700 Sobic008G170400--Sobic002G016400 Sobic008G170400--Sobic005G098400 Sobic008G170400--Sobic005G231400 Sobic008G170400--Sobic003G418300 Sobic010G007000 Sobic010G007000 Sobic008G170400--Sobic010G007000 Sobic005G110600 Sobic005G110600 Sobic008G170400--Sobic005G110600 Sobic002G064600 Sobic002G064600 Sobic008G170400--Sobic002G064600 Sobic006G062300 Sobic006G062300 Sobic008G170400--Sobic006G062300
Octagon: transcription factors


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