Gene annotation
Transcriptome id Sobic.001G045800.1
Synonym ADPG2, Sb01g004220, PGAZAT
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
polygalacturonase, putative, expressed
UniProt C5WW44
Pfam PF00295
Panther DB PTHR31375 PTHR31375:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004650polygalacturonase activity


Orthologs (automatic annotation)
TAIR AT2G41850 : polygalacturonase abscission zone A. thaliana
RAP-DB (Rice) LOC_Os07g10740.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a008672 , Zm00025a008671 , Zm00025a008677 , Zm00025a016504
Brachypodium KQK12577
Barley HORVU5Hr1G109980.1 , HORVU4Hr1G014790.2 , HORVU4Hr1G014790.1 , HORVU5Hr1G109980.2 , HORVU7Hr1G034150.1 , HORVU7Hr1G034150.2 , HORVU7Hr1G034150.3 , HORVU7Hr1G034150.4 , HORVU4Hr1G014780.1 , HORVU4Hr1G014780.2
Wheat TraesCS7B02G067800 , TraesCS7D02G164200 , TraesCS1D02G066400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G197800 lysM domain containing protein, putative -
2 Sobic.008G113900 AGAP002737-PA, putative, expressed -
3 Sobic.002G226500 "SG1(Ortholog in rice:Nakagawa et al., 2012)"(PubMedID : 31659856)@expressed protein -
4 Sobic.006G030200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.010G022500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
6 Sobic.001G466400 glycosyl hydrolase family 10 protein, putative, expressed -
7 Sobic.006G149300 possible lysine decarboxylase domain containing protein, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
8 Sobic.007G018100 no apical meristem protein, putative, expressed -
9 Sobic.003G418300 protein kinase, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
10 Sobic.007G050500 MYB family transcription factor, putative, expressed -
11 Sobic.002G016400 monocopper oxidase, putative, expressed -
12 Sobic.008G077300 expressed protein -
13 Sobic.003G247600 serine/threonine-protein kinase, putative, expressed -
14 Sobic.001G076300 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
15 Sobic.005G202200 integral membrane protein, putative, expressed -
16 Sobic.007G208100 heavy metal-associated domain containing protein, expressed -
17 Sobic.005G231300 thaumatin, putative, expressed -
18 Sobic.002G278200 thaumatin, putative, expressed -
19 Sobic.001G264400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
20 Sobic.009G061400 leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed -


Gene co-expression network
sample Sobic001G045800 Sobic001G045800 Sobic005G197800 Sobic005G197800 Sobic001G045800--Sobic005G197800 Sobic008G113900 Sobic008G113900 Sobic001G045800--Sobic008G113900 Sobic002G226500 Sobic002G226500 Sobic001G045800--Sobic002G226500 Sobic006G030200 Sobic006G030200 Sobic001G045800--Sobic006G030200 Sobic010G022500 Sobic010G022500 Sobic001G045800--Sobic010G022500 Sobic001G466400 Sobic001G466400 Sobic001G045800--Sobic001G466400 Sobic006G149300 Sobic006G149300 Sobic001G045800--Sobic006G149300 Sobic007G018100 Sobic007G018100 Sobic001G045800--Sobic007G018100 Sobic003G418300 Sobic003G418300 Sobic001G045800--Sobic003G418300 Sobic005G197800--Sobic001G045800 Sobic007G050500 Sobic007G050500 Sobic005G197800--Sobic007G050500 Sobic003G075566 Sobic003G075566 Sobic005G197800--Sobic003G075566 Sobic005G197800--Sobic003G418300 Sobic005G197800--Sobic001G466400 Sobic005G025900 Sobic005G025900 Sobic005G197800--Sobic005G025900 Sobic002G016400 Sobic002G016400 Sobic005G197800--Sobic002G016400 Sobic001G454800 Sobic001G454800 Sobic005G197800--Sobic001G454800 Sobic008G170400 Sobic008G170400 Sobic005G197800--Sobic008G170400 Sobic008G113900--Sobic006G030200 Sobic005G231300 Sobic005G231300 Sobic008G113900--Sobic005G231300 Sobic001G514300 Sobic001G514300 Sobic008G113900--Sobic001G514300 Sobic008G113900--Sobic002G226500 Sobic008G114000 Sobic008G114000 Sobic008G113900--Sobic008G114000 Sobic008G135300 Sobic008G135300 Sobic008G113900--Sobic008G135300 Sobic007G208100 Sobic007G208100 Sobic008G113900--Sobic007G208100 Sobic003G083600 Sobic003G083600 Sobic008G113900--Sobic003G083600 Sobic003G183300 Sobic003G183300 Sobic008G113900--Sobic003G183300 Sobic002G226500--Sobic006G030200 Sobic002G226500--Sobic008G113900 Sobic007G225400 Sobic007G225400 Sobic002G226500--Sobic007G225400 Sobic002G226500--Sobic010G022500 Sobic002G278200 Sobic002G278200 Sobic002G226500--Sobic002G278200 Sobic002G226500--Sobic006G149300 Sobic006G119000 Sobic006G119000 Sobic002G226500--Sobic006G119000 Sobic003G052900 Sobic003G052900 Sobic002G226500--Sobic003G052900 Sobic004G030300 Sobic004G030300 Sobic002G226500--Sobic004G030300 Sobic006G030200--Sobic006G119000 Sobic006G030200--Sobic002G226500 Sobic006G030200--Sobic005G231300 Sobic006G030200--Sobic008G113900 Sobic006G030200--Sobic001G514300 Sobic008G077300 Sobic008G077300 Sobic006G030200--Sobic008G077300 Sobic001G264400 Sobic001G264400 Sobic006G030200--Sobic001G264400 Sobic009G210400 Sobic009G210400 Sobic006G030200--Sobic009G210400 Sobic006G030200--Sobic002G016400 Sobic010G022500--Sobic002G226500 Sobic009G221800 Sobic009G221800 Sobic010G022500--Sobic009G221800 Sobic010G022500--Sobic001G264400 Sobic010G022500--Sobic008G113900 Sobic003G121000 Sobic003G121000 Sobic010G022500--Sobic003G121000 Sobic001G264300 Sobic001G264300 Sobic010G022500--Sobic001G264300 Sobic003G321400 Sobic003G321400 Sobic010G022500--Sobic003G321400 Sobic003G115200 Sobic003G115200 Sobic010G022500--Sobic003G115200 Sobic009G130300 Sobic009G130300 Sobic010G022500--Sobic009G130300 Sobic003G204300 Sobic003G204300 Sobic001G466400--Sobic003G204300 Sobic009G076300 Sobic009G076300 Sobic001G466400--Sobic009G076300 Sobic001G466400--Sobic005G197800 Sobic004G008300 Sobic004G008300 Sobic001G466400--Sobic004G008300 Sobic009G004950 Sobic009G004950 Sobic001G466400--Sobic009G004950 Sobic001G466400--Sobic001G045800 Sobic010G126800 Sobic010G126800 Sobic001G466400--Sobic010G126800 Sobic002G009100 Sobic002G009100 Sobic001G466400--Sobic002G009100 Sobic006G149300--Sobic002G016400 Sobic006G149300--Sobic007G208100 Sobic010G104400 Sobic010G104400 Sobic006G149300--Sobic010G104400 Sobic006G149300--Sobic005G231300 Sobic005G098400 Sobic005G098400 Sobic006G149300--Sobic005G098400 Sobic006G149300--Sobic002G226500 Sobic006G149300--Sobic002G278200 Sobic007G120301 Sobic007G120301 Sobic006G149300--Sobic007G120301 Sobic006G149300--Sobic007G018100 Sobic007G018100--Sobic006G149300 Sobic007G018100--Sobic003G052900 Sobic003G247600 Sobic003G247600 Sobic007G018100--Sobic003G247600 Sobic007G018100--Sobic008G113900 Sobic007G018100--Sobic004G030300 Sobic007G018100--Sobic007G208100 Sobic007G018100--Sobic005G231300 Sobic007G018100--Sobic006G030200 Sobic010G131400 Sobic010G131400 Sobic007G018100--Sobic010G131400 Sobic003G418300--Sobic002G016400 Sobic003G418300--Sobic005G098400 Sobic001G345200 Sobic001G345200 Sobic003G418300--Sobic001G345200 Sobic003G338200 Sobic003G338200 Sobic003G418300--Sobic003G338200 Sobic003G418300--Sobic008G170400 Sobic007G094200 Sobic007G094200 Sobic003G418300--Sobic007G094200 Sobic005G231400 Sobic005G231400 Sobic003G418300--Sobic005G231400 Sobic010G216600 Sobic010G216600 Sobic003G418300--Sobic010G216600 Sobic008G187400 Sobic008G187400 Sobic003G418300--Sobic008G187400
Octagon: transcription factors


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