Gene annotation
Transcriptome id Sobic.006G024600.1
Synonym Sb06g002240
Functional annotation transmembrane amino acid transporter protein, putative, expressed
UniProt A0A1B6PJM3
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF294
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology K15015; SLC32A, solute carrier family 32 (vesicular inhibitory amino acid transporter)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39130 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os02g01100.3 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a012445
Brachypodium PNT65651
Barley HORVU2Hr1G008090.9 , HORVU2Hr1G008090.8 , HORVU2Hr1G008090.6 , HORVU2Hr1G008090.4 , HORVU2Hr1G008090.3 , HORVU2Hr1G008090.2 , HORVU2Hr1G008090.1 , HORVU2Hr1G008090.15 , HORVU2Hr1G008090.13 , HORVU2Hr1G008090.12 , HORVU2Hr1G008090.11 , HORVU2Hr1G008090.10
Wheat TraesCS2B02G065200 , TraesCS2A02G052500 , TraesCSU02G023100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G225701 - -
2 Sobic.007G006200 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.005G211600 zinc knuckle family protein, expressed -
4 Sobic.001G200000 disease resistance RPP13-like protein 1, putative, expressed -
5 Sobic.004G092350 - -
6 Sobic.002G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
7 Sobic.010G230500 expressed protein -
8 Sobic.003G012400 flavin monooxygenase, putative, expressed -
9 Sobic.003G080300 expressed protein -
10 Sobic.007G090900 heat shock protein-related, putative, expressed -
11 Sobic.004G128900 GTP-binding protein typA/bipA, putative, expressed K06207: typA, GTP-binding protein
12 Sobic.007G227100 expressed protein -
13 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
14 Sobic.010G178401 - -
15 Sobic.007G121300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
16 Sobic.006G235400 ELMO/CED-12 family protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
17 Sobic.006G235300 expressed protein -
18 Sobic.001G331600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
19 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2
20 Sobic.006G191500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G024600 Sobic006G024600 Sobic010G225701 Sobic010G225701 Sobic006G024600--Sobic010G225701 Sobic007G006200 Sobic007G006200 Sobic006G024600--Sobic007G006200 Sobic005G211600 Sobic005G211600 Sobic006G024600--Sobic005G211600 Sobic001G200000 Sobic001G200000 Sobic006G024600--Sobic001G200000 Sobic004G092350 Sobic004G092350 Sobic006G024600--Sobic004G092350 Sobic002G161400 Sobic002G161400 Sobic006G024600--Sobic002G161400 Sobic010G230500 Sobic010G230500 Sobic006G024600--Sobic010G230500 Sobic003G012400 Sobic003G012400 Sobic006G024600--Sobic003G012400 Sobic003G080300 Sobic003G080300 Sobic006G024600--Sobic003G080300 Sobic010G225701--Sobic007G006200 Sobic002G162400 Sobic002G162400 Sobic010G225701--Sobic002G162400 Sobic009G194500 Sobic009G194500 Sobic010G225701--Sobic009G194500 Sobic001G244600 Sobic001G244600 Sobic010G225701--Sobic001G244600 Sobic001G243200 Sobic001G243200 Sobic010G225701--Sobic001G243200 Sobic001G077300 Sobic001G077300 Sobic010G225701--Sobic001G077300 Sobic001G263100 Sobic001G263100 Sobic010G225701--Sobic001G263100 Sobic006G235300 Sobic006G235300 Sobic010G225701--Sobic006G235300 Sobic008G038500 Sobic008G038500 Sobic010G225701--Sobic008G038500 Sobic006G191500 Sobic006G191500 Sobic007G006200--Sobic006G191500 Sobic007G006200--Sobic002G161400 Sobic004G127800 Sobic004G127800 Sobic007G006200--Sobic004G127800 Sobic010G223200 Sobic010G223200 Sobic007G006200--Sobic010G223200 Sobic007G006200--Sobic006G235300 Sobic003G380200 Sobic003G380200 Sobic007G006200--Sobic003G380200 Sobic006G090100 Sobic006G090100 Sobic007G006200--Sobic006G090100 Sobic007G006200--Sobic001G077300 Sobic002G119100 Sobic002G119100 Sobic007G006200--Sobic002G119100 Sobic010G178401 Sobic010G178401 Sobic005G211600--Sobic010G178401 Sobic007G044700 Sobic007G044700 Sobic005G211600--Sobic007G044700 Sobic010G271901 Sobic010G271901 Sobic005G211600--Sobic010G271901 Sobic005G211600--Sobic006G024600 Sobic002G077400 Sobic002G077400 Sobic005G211600--Sobic002G077400 Sobic007G005900 Sobic007G005900 Sobic005G211600--Sobic007G005900 Sobic006G036700 Sobic006G036700 Sobic005G211600--Sobic006G036700 Sobic005G211600--Sobic004G092350 Sobic005G211600--Sobic003G080300 Sobic010G104700 Sobic010G104700 Sobic001G200000--Sobic010G104700 Sobic007G006400 Sobic007G006400 Sobic001G200000--Sobic007G006400 Sobic010G101000 Sobic010G101000 Sobic001G200000--Sobic010G101000 Sobic008G180800 Sobic008G180800 Sobic001G200000--Sobic008G180800 Sobic009G225600 Sobic009G225600 Sobic001G200000--Sobic009G225600 Sobic008G149100 Sobic008G149100 Sobic001G200000--Sobic008G149100 Sobic004G153900 Sobic004G153900 Sobic001G200000--Sobic004G153900 Sobic001G046000 Sobic001G046000 Sobic001G200000--Sobic001G046000 Sobic003G304300 Sobic003G304300 Sobic001G200000--Sobic003G304300 Sobic002G137850 Sobic002G137850 Sobic004G092350--Sobic002G137850 Sobic006G037900 Sobic006G037900 Sobic004G092350--Sobic006G037900 Sobic004G124601 Sobic004G124601 Sobic004G092350--Sobic004G124601 Sobic004G117000 Sobic004G117000 Sobic004G092350--Sobic004G117000 Sobic002G171101 Sobic002G171101 Sobic004G092350--Sobic002G171101 Sobic004G154532 Sobic004G154532 Sobic004G092350--Sobic004G154532 Sobic010G100300 Sobic010G100300 Sobic004G092350--Sobic010G100300 Sobic004G296600 Sobic004G296600 Sobic004G092350--Sobic004G296600 Sobic004G092350--Sobic002G119100 Sobic002G161400--Sobic006G191500 Sobic004G344600 Sobic004G344600 Sobic002G161400--Sobic004G344600 Sobic004G128900 Sobic004G128900 Sobic002G161400--Sobic004G128900 Sobic002G161400--Sobic003G304300 Sobic001G485100 Sobic001G485100 Sobic002G161400--Sobic001G485100 Sobic002G161400--Sobic004G153900 Sobic003G339200 Sobic003G339200 Sobic002G161400--Sobic003G339200 Sobic002G161400--Sobic003G380200 Sobic001G112900 Sobic001G112900 Sobic002G161400--Sobic001G112900 Sobic010G074300 Sobic010G074300 Sobic010G230500--Sobic010G074300 Sobic003G295900 Sobic003G295900 Sobic010G230500--Sobic003G295900 Sobic004G189200 Sobic004G189200 Sobic010G230500--Sobic004G189200 Sobic008G089900 Sobic008G089900 Sobic010G230500--Sobic008G089900 Sobic004G103000 Sobic004G103000 Sobic010G230500--Sobic004G103000 Sobic002G358800 Sobic002G358800 Sobic010G230500--Sobic002G358800 Sobic008G077500 Sobic008G077500 Sobic010G230500--Sobic008G077500 Sobic007G090900 Sobic007G090900 Sobic010G230500--Sobic007G090900 Sobic002G290400 Sobic002G290400 Sobic010G230500--Sobic002G290400 Sobic003G012400--Sobic004G128900 Sobic003G012400--Sobic004G153900 Sobic003G012400--Sobic002G161400 Sobic006G161500 Sobic006G161500 Sobic003G012400--Sobic006G161500 Sobic003G012400--Sobic001G263100 Sobic004G035100 Sobic004G035100 Sobic003G012400--Sobic004G035100 Sobic006G235400 Sobic006G235400 Sobic003G012400--Sobic006G235400 Sobic009G246400 Sobic009G246400 Sobic003G012400--Sobic009G246400 Sobic001G331600 Sobic001G331600 Sobic003G012400--Sobic001G331600 Sobic003G080300--Sobic004G344600 Sobic003G080300--Sobic009G246400 Sobic003G080300--Sobic010G178401 Sobic005G208200 Sobic005G208200 Sobic003G080300--Sobic005G208200 Sobic009G259100 Sobic009G259100 Sobic003G080300--Sobic009G259100 Sobic003G080300--Sobic002G161400 Sobic003G080300--Sobic001G112900 Sobic004G223400 Sobic004G223400 Sobic003G080300--Sobic004G223400 Sobic003G340300 Sobic003G340300 Sobic003G080300--Sobic003G340300
Octagon: transcription factors


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