Gene annotation
Transcriptome id Sobic.006G055400.1
Synonym Sb06g014370
Functional annotation hydroxyproline-rich glycoprotein family protein, putative, expressed
UniProt C5YEW5
Pfam PF03114
Panther DB PTHR34119 PTHR34119:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005737; cytoplasm GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G33490 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os04g32370.1 : hydroxyproline-rich glycoprotein family protein, putative, expressed
MaizeGDB (Corn) Zm00025a055917
Brachypodium PNT60967 , PNT60968 , KQJ82388 , KQJ82387 , KQJ82386
Barley HORVU2Hr1G070720.21 , HORVU2Hr1G070720.20 , HORVU2Hr1G070720.22 , HORVU2Hr1G070720.25 , HORVU2Hr1G070720.24 , HORVU2Hr1G070720.26 , HORVU2Hr1G070720.29 , HORVU2Hr1G070720.28 , HORVU2Hr1G070720.40 , HORVU2Hr1G070720.36 , HORVU2Hr1G070720.37 , HORVU2Hr1G070720.34 , HORVU2Hr1G070720.35 , HORVU2Hr1G070720.32 , HORVU2Hr1G070720.33 , HORVU2Hr1G070720.30 , HORVU2Hr1G070720.31 , HORVU2Hr1G070720.38 , HORVU2Hr1G070720.39 , HORVU2Hr1G070720.23 , HORVU2Hr1G070720.7 , HORVU2Hr1G070720.4 , HORVU2Hr1G070720.5 , HORVU2Hr1G070720.2 , HORVU2Hr1G070720.3 , HORVU2Hr1G070720.1 , HORVU2Hr1G070720.8 , HORVU2Hr1G070720.9 , HORVU2Hr1G070720.27 , HORVU2Hr1G070720.18 , HORVU2Hr1G070720.19 , HORVU2Hr1G070720.14 , HORVU2Hr1G070720.15 , HORVU2Hr1G070720.16 , HORVU2Hr1G070720.17 , HORVU2Hr1G070720.10 , HORVU2Hr1G070720.11 , HORVU2Hr1G070720.12 , HORVU2Hr1G070720.13
Wheat TraesCS2B02G303100 , TraesCS2A02G286000 , TraesCS2D02G284800 , TraesCS2D02G284800 , TraesCS2D02G284800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
2 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
3 Sobic.003G043800 BT1 family protein, putative, expressed -
4 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
5 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
6 Sobic.001G413200 expressed protein -
7 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
8 Sobic.001G127000 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
9 Sobic.002G131900 expressed protein -
10 Sobic.006G194500 expressed protein -
11 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
12 Sobic.003G273500 expressed protein -
13 Sobic.010G026300 hypersensitive-induced response protein, putative, expressed -
14 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
15 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
16 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
17 Sobic.006G213601 - -
18 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
19 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
20 Sobic.002G067600 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi


Gene co-expression network
sample Sobic006G055400 Sobic006G055400 Sobic006G148200 Sobic006G148200 Sobic006G055400--Sobic006G148200 Sobic004G274400 Sobic004G274400 Sobic006G055400--Sobic004G274400 Sobic003G043800 Sobic003G043800 Sobic006G055400--Sobic003G043800 Sobic006G225600 Sobic006G225600 Sobic006G055400--Sobic006G225600 Sobic009G059700 Sobic009G059700 Sobic006G055400--Sobic009G059700 Sobic001G413200 Sobic001G413200 Sobic006G055400--Sobic001G413200 Sobic009G257200 Sobic009G257200 Sobic006G055400--Sobic009G257200 Sobic001G127000 Sobic001G127000 Sobic006G055400--Sobic001G127000 Sobic002G131900 Sobic002G131900 Sobic006G055400--Sobic002G131900 Sobic006G148200--Sobic004G274400 Sobic001G085100 Sobic001G085100 Sobic006G148200--Sobic001G085100 Sobic006G034000 Sobic006G034000 Sobic006G148200--Sobic006G034000 Sobic001G323000 Sobic001G323000 Sobic006G148200--Sobic001G323000 Sobic009G228700 Sobic009G228700 Sobic006G148200--Sobic009G228700 Sobic001G033500 Sobic001G033500 Sobic006G148200--Sobic001G033500 Sobic001G206900 Sobic001G206900 Sobic006G148200--Sobic001G206900 Sobic010G000900 Sobic010G000900 Sobic006G148200--Sobic010G000900 Sobic001G048700 Sobic001G048700 Sobic006G148200--Sobic001G048700 Sobic004G274400--Sobic006G148200 Sobic004G274400--Sobic001G323000 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic004G274400--Sobic002G131900 Sobic003G312200 Sobic003G312200 Sobic004G274400--Sobic003G312200 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic006G217300 Sobic006G217300 Sobic003G043800--Sobic006G217300 Sobic001G122500 Sobic001G122500 Sobic003G043800--Sobic001G122500 Sobic010G026300 Sobic010G026300 Sobic003G043800--Sobic010G026300 Sobic004G124500 Sobic004G124500 Sobic003G043800--Sobic004G124500 Sobic004G207900 Sobic004G207900 Sobic003G043800--Sobic004G207900 Sobic001G378200 Sobic001G378200 Sobic003G043800--Sobic001G378200 Sobic006G207900 Sobic006G207900 Sobic003G043800--Sobic006G207900 Sobic003G043800--Sobic006G055400 Sobic005G207400 Sobic005G207400 Sobic003G043800--Sobic005G207400 Sobic004G234900 Sobic004G234900 Sobic006G225600--Sobic004G234900 Sobic002G251700 Sobic002G251700 Sobic006G225600--Sobic002G251700 Sobic001G162100 Sobic001G162100 Sobic006G225600--Sobic001G162100 Sobic001G098200 Sobic001G098200 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic002G122700 Sobic002G122700 Sobic006G225600--Sobic002G122700 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic001G434900 Sobic001G434900 Sobic006G225600--Sobic001G434900 Sobic009G059700--Sobic001G162100 Sobic008G016900 Sobic008G016900 Sobic009G059700--Sobic008G016900 Sobic001G283500 Sobic001G283500 Sobic009G059700--Sobic001G283500 Sobic009G059700--Sobic006G225600 Sobic002G330300 Sobic002G330300 Sobic009G059700--Sobic002G330300 Sobic002G368400 Sobic002G368400 Sobic009G059700--Sobic002G368400 Sobic002G119800 Sobic002G119800 Sobic009G059700--Sobic002G119800 Sobic009G134600 Sobic009G134600 Sobic009G059700--Sobic009G134600 Sobic010G062800 Sobic010G062800 Sobic009G059700--Sobic010G062800 Sobic006G180000 Sobic006G180000 Sobic001G413200--Sobic006G180000 Sobic001G413200--Sobic009G257200 Sobic004G003401 Sobic004G003401 Sobic001G413200--Sobic004G003401 Sobic003G332500 Sobic003G332500 Sobic001G413200--Sobic003G332500 Sobic005G074500 Sobic005G074500 Sobic001G413200--Sobic005G074500 Sobic009G092400 Sobic009G092400 Sobic001G413200--Sobic009G092400 Sobic010G020300 Sobic010G020300 Sobic001G413200--Sobic010G020300 Sobic001G431000 Sobic001G431000 Sobic001G413200--Sobic001G431000 Sobic009G174000 Sobic009G174000 Sobic001G413200--Sobic009G174000 Sobic003G187200 Sobic003G187200 Sobic009G257200--Sobic003G187200 Sobic009G257200--Sobic009G228700 Sobic004G039600 Sobic004G039600 Sobic009G257200--Sobic004G039600 Sobic002G361300 Sobic002G361300 Sobic009G257200--Sobic002G361300 Sobic007G132100 Sobic007G132100 Sobic009G257200--Sobic007G132100 Sobic010G261600 Sobic010G261600 Sobic009G257200--Sobic010G261600 Sobic002G378200 Sobic002G378200 Sobic009G257200--Sobic002G378200 Sobic002G303600 Sobic002G303600 Sobic009G257200--Sobic002G303600 Sobic009G257200--Sobic001G127000 Sobic001G127000--Sobic009G257200 Sobic001G127000--Sobic002G361300 Sobic002G067600 Sobic002G067600 Sobic001G127000--Sobic002G067600 Sobic003G270600 Sobic003G270600 Sobic001G127000--Sobic003G270600 Sobic001G127000--Sobic003G187200 Sobic004G003501 Sobic004G003501 Sobic001G127000--Sobic004G003501 Sobic006G126100 Sobic006G126100 Sobic001G127000--Sobic006G126100 Sobic007G120500 Sobic007G120500 Sobic001G127000--Sobic007G120500 Sobic006G194500 Sobic006G194500 Sobic001G127000--Sobic006G194500 Sobic006G257001 Sobic006G257001 Sobic002G131900--Sobic006G257001 Sobic003G400100 Sobic003G400100 Sobic002G131900--Sobic003G400100 Sobic002G131900--Sobic004G274400 Sobic001G237500 Sobic001G237500 Sobic002G131900--Sobic001G237500 Sobic010G105600 Sobic010G105600 Sobic002G131900--Sobic010G105600 Sobic001G067900 Sobic001G067900 Sobic002G131900--Sobic001G067900 Sobic006G034800 Sobic006G034800 Sobic002G131900--Sobic006G034800 Sobic003G052400 Sobic003G052400 Sobic002G131900--Sobic003G052400 Sobic004G072800 Sobic004G072800 Sobic002G131900--Sobic004G072800
Octagon: transcription factors


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