Gene annotation
Transcriptome id Sobic.006G075500.1
Synonym MKS1, Sb06g016290
Functional annotation VQ domain containing protein, putative, expressed
UniProt A0A1Z5RDU2
Pfam PF05678
Panther DB PTHR33143 PTHR33143:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68450 : VQ motif-containing protein
RAP-DB (Rice) LOC_Os04g34050.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056022 , Zm00025a011463
Brachypodium KQJ82573
Barley HORVU0Hr1G004060.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G209100 WRKY28, expressed -
2 Sobic.007G085300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY25, expressed -
3 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
4 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
5 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
6 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
7 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.003G380900 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659872)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed -
9 Sobic.004G241100 NHL repeat-containing protein, putative, expressed -
10 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
11 Sobic.002G319500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
12 Sobic.007G077200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
14 Sobic.007G057700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.010G238600 transferase family protein, putative, expressed -
16 Sobic.003G254900 no apical meristem protein, putative, expressed -
17 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
20 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G075500 Sobic006G075500 Sobic010G209100 Sobic010G209100 Sobic006G075500--Sobic010G209100 Sobic007G085300 Sobic007G085300 Sobic006G075500--Sobic007G085300 Sobic006G066200 Sobic006G066200 Sobic006G075500--Sobic006G066200 Sobic009G247900 Sobic009G247900 Sobic006G075500--Sobic009G247900 Sobic001G192600 Sobic001G192600 Sobic006G075500--Sobic001G192600 Sobic003G430400 Sobic003G430400 Sobic006G075500--Sobic003G430400 Sobic006G148000 Sobic006G148000 Sobic006G075500--Sobic006G148000 Sobic003G380900 Sobic003G380900 Sobic006G075500--Sobic003G380900 Sobic004G241100 Sobic004G241100 Sobic006G075500--Sobic004G241100 Sobic001G259600 Sobic001G259600 Sobic010G209100--Sobic001G259600 Sobic001G341600 Sobic001G341600 Sobic010G209100--Sobic001G341600 Sobic001G077400 Sobic001G077400 Sobic010G209100--Sobic001G077400 Sobic007G077200 Sobic007G077200 Sobic010G209100--Sobic007G077200 Sobic002G036100 Sobic002G036100 Sobic010G209100--Sobic002G036100 Sobic004G280900 Sobic004G280900 Sobic010G209100--Sobic004G280900 Sobic005G109000 Sobic005G109000 Sobic010G209100--Sobic005G109000 Sobic002G140300 Sobic002G140300 Sobic010G209100--Sobic002G140300 Sobic009G217500 Sobic009G217500 Sobic010G209100--Sobic009G217500 Sobic004G171700 Sobic004G171700 Sobic007G085300--Sobic004G171700 Sobic010G064000 Sobic010G064000 Sobic007G085300--Sobic010G064000 Sobic009G200700 Sobic009G200700 Sobic007G085300--Sobic009G200700 Sobic007G085300--Sobic003G380900 Sobic001G190100 Sobic001G190100 Sobic007G085300--Sobic001G190100 Sobic001G391500 Sobic001G391500 Sobic007G085300--Sobic001G391500 Sobic001G459800 Sobic001G459800 Sobic007G085300--Sobic001G459800 Sobic003G228900 Sobic003G228900 Sobic007G085300--Sobic003G228900 Sobic001G471200 Sobic001G471200 Sobic007G085300--Sobic001G471200 Sobic006G066200--Sobic003G430400 Sobic006G066200--Sobic002G140300 Sobic004G222500 Sobic004G222500 Sobic006G066200--Sobic004G222500 Sobic006G066200--Sobic009G247900 Sobic004G341800 Sobic004G341800 Sobic006G066200--Sobic004G341800 Sobic001G040200 Sobic001G040200 Sobic006G066200--Sobic001G040200 Sobic003G092900 Sobic003G092900 Sobic006G066200--Sobic003G092900 Sobic002G131800 Sobic002G131800 Sobic006G066200--Sobic002G131800 Sobic006G179500 Sobic006G179500 Sobic006G066200--Sobic006G179500 Sobic007G074000 Sobic007G074000 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic009G247900--Sobic003G228900 Sobic003G428700 Sobic003G428700 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G036100 Sobic009G036100 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic009G247900--Sobic004G341800 Sobic002G192000 Sobic002G192000 Sobic001G192600--Sobic002G192000 Sobic001G367600 Sobic001G367600 Sobic001G192600--Sobic001G367600 Sobic001G038900 Sobic001G038900 Sobic001G192600--Sobic001G038900 Sobic006G158600 Sobic006G158600 Sobic001G192600--Sobic006G158600 Sobic001G423800 Sobic001G423800 Sobic001G192600--Sobic001G423800 Sobic001G055600 Sobic001G055600 Sobic001G192600--Sobic001G055600 Sobic001G481100 Sobic001G481100 Sobic001G192600--Sobic001G481100 Sobic009G221400 Sobic009G221400 Sobic001G192600--Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic001G192600--Sobic002G353900 Sobic002G263400 Sobic002G263400 Sobic003G430400--Sobic002G263400 Sobic002G140400 Sobic002G140400 Sobic003G430400--Sobic002G140400 Sobic003G430400--Sobic001G040200 Sobic003G430400--Sobic006G066200 Sobic003G430400--Sobic002G140300 Sobic003G430400--Sobic007G074000 Sobic003G430400--Sobic003G092900 Sobic002G356101 Sobic002G356101 Sobic003G430400--Sobic002G356101 Sobic003G430400--Sobic004G222500 Sobic006G148000--Sobic009G200700 Sobic006G267000 Sobic006G267000 Sobic006G148000--Sobic006G267000 Sobic006G148000--Sobic003G430400 Sobic006G148000--Sobic002G140300 Sobic006G148000--Sobic006G179500 Sobic004G283500 Sobic004G283500 Sobic006G148000--Sobic004G283500 Sobic006G148000--Sobic001G040200 Sobic002G359300 Sobic002G359300 Sobic006G148000--Sobic002G359300 Sobic001G320900 Sobic001G320900 Sobic006G148000--Sobic001G320900 Sobic003G380900--Sobic003G428700 Sobic001G079300 Sobic001G079300 Sobic003G380900--Sobic001G079300 Sobic009G122400 Sobic009G122400 Sobic003G380900--Sobic009G122400 Sobic003G380900--Sobic010G209200 Sobic004G191400 Sobic004G191400 Sobic003G380900--Sobic004G191400 Sobic003G380900--Sobic004G222500 Sobic003G380900--Sobic009G247900 Sobic001G205350 Sobic001G205350 Sobic003G380900--Sobic001G205350 Sobic003G093000 Sobic003G093000 Sobic003G380900--Sobic003G093000 Sobic004G169200 Sobic004G169200 Sobic004G241100--Sobic004G169200 Sobic004G241100--Sobic003G428700 Sobic006G263600 Sobic006G263600 Sobic004G241100--Sobic006G263600 Sobic004G241100--Sobic009G036000 Sobic001G035100 Sobic001G035100 Sobic004G241100--Sobic001G035100 Sobic004G241100--Sobic001G259600 Sobic003G364600 Sobic003G364600 Sobic004G241100--Sobic003G364600 Sobic003G339500 Sobic003G339500 Sobic004G241100--Sobic003G339500 Sobic004G241100--Sobic010G209200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.