Gene annotation
Transcriptome id Sobic.006G086400.1
Synonym PUB25, Sb06g017230
Functional annotation U-box domain containing protein, expressed
UniProt A0A1Z5RCY2
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF53
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G19380 : plant U-box 25
RAP-DB (Rice) LOC_Os04g35680.1 : U-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011312
Brachypodium KQJ92155 , PNT61130
Barley HORVU2Hr1G076490.1 , HORVU7Hr1G093780.1
Wheat TraesCS2A02G307000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G494150 - -
2 Sobic.004G288400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.003G293700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
4 Sobic.010G119600 embryogenesis transmembrane protein, putative, expressed -
5 Sobic.006G075700 expressed protein -
6 Sobic.002G339400 expressed protein -
7 Sobic.001G071000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
8 Sobic.010G014300 expressed protein -
9 Sobic.010G259200 harpin-induced protein 1 domain containing protein, expressed -
10 Sobic.009G236500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G108900 - -
12 Sobic.004G128800 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
13 Sobic.006G058732 - -
14 Sobic.009G187000 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
15 Sobic.008G134000 NBS-LRR disease resistance protein, putative, expressed -
16 Sobic.003G075901 - -
17 Sobic.010G002850 - -
18 Sobic.001G428700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.008G136900 expressed protein -
20 Sobic.009G028600 expressed protein -


Gene co-expression network
sample Sobic006G086400 Sobic006G086400 Sobic001G494150 Sobic001G494150 Sobic006G086400--Sobic001G494150 Sobic004G288400 Sobic004G288400 Sobic006G086400--Sobic004G288400 Sobic003G293700 Sobic003G293700 Sobic006G086400--Sobic003G293700 Sobic010G119600 Sobic010G119600 Sobic006G086400--Sobic010G119600 Sobic006G075700 Sobic006G075700 Sobic006G086400--Sobic006G075700 Sobic002G339400 Sobic002G339400 Sobic006G086400--Sobic002G339400 Sobic001G071000 Sobic001G071000 Sobic006G086400--Sobic001G071000 Sobic010G014300 Sobic010G014300 Sobic006G086400--Sobic010G014300 Sobic010G259200 Sobic010G259200 Sobic006G086400--Sobic010G259200 Sobic001G494150--Sobic006G075700 Sobic001G494150--Sobic010G259200 Sobic001G494150--Sobic010G119600 Sobic009G236500 Sobic009G236500 Sobic001G494150--Sobic009G236500 Sobic002G001300 Sobic002G001300 Sobic001G494150--Sobic002G001300 Sobic002G366700 Sobic002G366700 Sobic001G494150--Sobic002G366700 Sobic010G002850 Sobic010G002850 Sobic001G494150--Sobic010G002850 Sobic010G087200 Sobic010G087200 Sobic001G494150--Sobic010G087200 Sobic005G156700 Sobic005G156700 Sobic001G494150--Sobic005G156700 Sobic006G166700 Sobic006G166700 Sobic004G288400--Sobic006G166700 Sobic004G288400--Sobic010G014300 Sobic005G198300 Sobic005G198300 Sobic004G288400--Sobic005G198300 Sobic001G239400 Sobic001G239400 Sobic004G288400--Sobic001G239400 Sobic004G288400--Sobic002G339400 Sobic004G288400--Sobic010G087200 Sobic001G428700 Sobic001G428700 Sobic004G288400--Sobic001G428700 Sobic007G133600 Sobic007G133600 Sobic004G288400--Sobic007G133600 Sobic001G005000 Sobic001G005000 Sobic004G288400--Sobic001G005000 Sobic007G124400 Sobic007G124400 Sobic003G293700--Sobic007G124400 Sobic003G293700--Sobic002G339400 Sobic003G293700--Sobic004G288400 Sobic003G293700--Sobic007G133600 Sobic003G293700--Sobic001G071000 Sobic003G293700--Sobic001G494150 Sobic003G293700--Sobic001G428700 Sobic002G245900 Sobic002G245900 Sobic003G293700--Sobic002G245900 Sobic010G099600 Sobic010G099600 Sobic003G293700--Sobic010G099600 Sobic010G119600--Sobic010G259200 Sobic001G483700 Sobic001G483700 Sobic010G119600--Sobic001G483700 Sobic003G390300 Sobic003G390300 Sobic010G119600--Sobic003G390300 Sobic001G137200 Sobic001G137200 Sobic010G119600--Sobic001G137200 Sobic010G119600--Sobic010G002850 Sobic007G206700 Sobic007G206700 Sobic010G119600--Sobic007G206700 Sobic003G104900 Sobic003G104900 Sobic010G119600--Sobic003G104900 Sobic001G062700 Sobic001G062700 Sobic010G119600--Sobic001G062700 Sobic003G083700 Sobic003G083700 Sobic010G119600--Sobic003G083700 Sobic006G075700--Sobic001G494150 Sobic006G075700--Sobic005G156700 Sobic006G075700--Sobic010G002850 Sobic002G003100 Sobic002G003100 Sobic006G075700--Sobic002G003100 Sobic005G209800 Sobic005G209800 Sobic006G075700--Sobic005G209800 Sobic004G089700 Sobic004G089700 Sobic006G075700--Sobic004G089700 Sobic002G048250 Sobic002G048250 Sobic006G075700--Sobic002G048250 Sobic007G183000 Sobic007G183000 Sobic006G075700--Sobic007G183000 Sobic006G171000 Sobic006G171000 Sobic006G075700--Sobic006G171000 Sobic002G339400--Sobic002G366700 Sobic002G339400--Sobic001G494150 Sobic002G339400--Sobic010G087200 Sobic002G339400--Sobic001G428700 Sobic002G339400--Sobic004G288400 Sobic002G339400--Sobic010G014300 Sobic002G339400--Sobic006G075700 Sobic002G339400--Sobic006G166700 Sobic002G339400--Sobic010G259200 Sobic001G071000--Sobic003G293700 Sobic001G071000--Sobic004G288400 Sobic006G058732 Sobic006G058732 Sobic001G071000--Sobic006G058732 Sobic010G143900 Sobic010G143900 Sobic001G071000--Sobic010G143900 Sobic001G071000--Sobic002G245900 Sobic010G067300 Sobic010G067300 Sobic001G071000--Sobic010G067300 Sobic001G071000--Sobic007G133600 Sobic004G099500 Sobic004G099500 Sobic001G071000--Sobic004G099500 Sobic004G335600 Sobic004G335600 Sobic001G071000--Sobic004G335600 Sobic010G014300--Sobic010G259200 Sobic010G014300--Sobic010G119600 Sobic010G014300--Sobic010G087200 Sobic010G014300--Sobic006G166700 Sobic010G014300--Sobic007G206700 Sobic010G014300--Sobic002G001300 Sobic010G014300--Sobic001G062700 Sobic007G092300 Sobic007G092300 Sobic010G014300--Sobic007G092300 Sobic010G014300--Sobic001G005000 Sobic010G259200--Sobic007G206700 Sobic010G259200--Sobic002G001300 Sobic010G259200--Sobic010G119600 Sobic010G259200--Sobic003G083700 Sobic001G402701 Sobic001G402701 Sobic010G259200--Sobic001G402701 Sobic010G259200--Sobic003G104900 Sobic010G259200--Sobic003G390300 Sobic010G259200--Sobic010G002850 Sobic010G259200--Sobic010G014300
Octagon: transcription factors


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