Gene annotation
Transcriptome id Sobic.006G096700.1
Synonym Sb06g018146
Functional annotation extracellular ligand-gated ion channel, putative, expressed
UniProt A0A1B6PL63
Pfam PF12056
Panther DB PTHR31963 PTHR31963:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G20300 : Protein of unknown function (DUF3537)
RAP-DB (Rice) LOC_Os04g37520.1 : extracellular ligand-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a020748 , Zm00025a020750 , Zm00025a011194
Brachypodium KQJ99969 , KQJ82859
Barley HORVU2Hr1G078640.3 , HORVU2Hr1G078640.2 , HORVU2Hr1G078640.4 , HORVU2Hr1G078640.1
Wheat TraesCS2B02G334200 , TraesCS2A02G316000 , TraesCS1A02G087100 , TraesCS1D02G088700 , TraesCS2D02G314000 , TraesCS1B02G105700
Populus -


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cDNA sequences
Sobic.006G096700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G023600 pollen allergen Cyn d 23, putative, expressed -
2 Sobic.010G276200 MLO domain containing protein, putative, expressed K08472: mlo protein
3 Sobic.004G080000 polygalacturonase, putative, expressed K01213: galacturan 1,4-alpha-galacturonidase
4 Sobic.006G105500 pectinesterase, putative, expressed -
5 Sobic.007G146300 pectinesterase, putative, expressed -
6 Sobic.004G359900 expressed protein -
7 Sobic.006G193700 DUF581 domain containing protein, expressed -
8 Sobic.004G041800 expressed protein -
9 Sobic.010G151575 - -
10 Sobic.001G024250 - -
11 Sobic.004G334900 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
12 Sobic.010G089900 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
13 Sobic.010G176400 pectate lyase precursor, putative, expressed K01728: pectate lyase
14 Sobic.002G224000 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
15 Sobic.003G329600 CAMK_CAMK_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
16 Sobic.001G466100 glycosyl hydrolase family 10 protein, putative, expressed -
17 Sobic.004G197200 fimbrin-like protein 2, putative, expressed -
18 Sobic.001G445400 expressed protein -
19 Sobic.001G539940 - -
20 Sobic.005G212900 IWS1 homolog A, putative, expressed -


Gene co-expression network
sample Sobic006G096700 Sobic006G096700 Sobic005G023600 Sobic005G023600 Sobic006G096700--Sobic005G023600 Sobic010G276200 Sobic010G276200 Sobic006G096700--Sobic010G276200 Sobic004G080000 Sobic004G080000 Sobic006G096700--Sobic004G080000 Sobic006G105500 Sobic006G105500 Sobic006G096700--Sobic006G105500 Sobic007G146300 Sobic007G146300 Sobic006G096700--Sobic007G146300 Sobic004G359900 Sobic004G359900 Sobic006G096700--Sobic004G359900 Sobic006G193700 Sobic006G193700 Sobic006G096700--Sobic006G193700 Sobic004G041800 Sobic004G041800 Sobic006G096700--Sobic004G041800 Sobic010G151575 Sobic010G151575 Sobic006G096700--Sobic010G151575 Sobic005G023600--Sobic006G193700 Sobic005G023600--Sobic006G105500 Sobic005G023600--Sobic004G359900 Sobic005G023600--Sobic010G151575 Sobic005G023600--Sobic007G146300 Sobic005G023600--Sobic010G276200 Sobic005G023600--Sobic004G080000 Sobic010G089900 Sobic010G089900 Sobic005G023600--Sobic010G089900 Sobic002G224000 Sobic002G224000 Sobic005G023600--Sobic002G224000 Sobic010G276200--Sobic004G080000 Sobic010G276200--Sobic004G041800 Sobic010G276200--Sobic007G146300 Sobic010G276200--Sobic005G023600 Sobic001G466100 Sobic001G466100 Sobic010G276200--Sobic001G466100 Sobic010G176400 Sobic010G176400 Sobic010G276200--Sobic010G176400 Sobic010G276200--Sobic006G105500 Sobic001G024250 Sobic001G024250 Sobic010G276200--Sobic001G024250 Sobic010G276200--Sobic010G089900 Sobic004G080000--Sobic004G041800 Sobic004G080000--Sobic007G146300 Sobic004G080000--Sobic001G466100 Sobic004G080000--Sobic010G276200 Sobic004G080000--Sobic005G023600 Sobic005G209300 Sobic005G209300 Sobic004G080000--Sobic005G209300 Sobic004G080000--Sobic010G176400 Sobic004G123100 Sobic004G123100 Sobic004G080000--Sobic004G123100 Sobic003G329600 Sobic003G329600 Sobic004G080000--Sobic003G329600 Sobic006G105500--Sobic010G151575 Sobic006G105500--Sobic004G359900 Sobic006G105500--Sobic002G224000 Sobic006G105500--Sobic010G089900 Sobic006G105500--Sobic006G193700 Sobic004G197200 Sobic004G197200 Sobic006G105500--Sobic004G197200 Sobic001G539940 Sobic001G539940 Sobic006G105500--Sobic001G539940 Sobic002G007900 Sobic002G007900 Sobic006G105500--Sobic002G007900 Sobic006G105500--Sobic005G023600 Sobic007G146300--Sobic004G080000 Sobic007G146300--Sobic004G041800 Sobic007G146300--Sobic010G276200 Sobic007G146300--Sobic005G023600 Sobic007G146300--Sobic005G209300 Sobic007G146300--Sobic001G466100 Sobic007G146300--Sobic001G024250 Sobic007G146300--Sobic010G176400 Sobic007G146300--Sobic006G105500 Sobic004G359900--Sobic010G151575 Sobic004G359900--Sobic006G105500 Sobic004G359900--Sobic002G224000 Sobic004G359900--Sobic004G197200 Sobic004G359900--Sobic006G193700 Sobic004G359900--Sobic002G007900 Sobic002G121800 Sobic002G121800 Sobic004G359900--Sobic002G121800 Sobic004G359900--Sobic001G539940 Sobic004G359900--Sobic010G089900 Sobic006G193700--Sobic004G359900 Sobic006G193700--Sobic006G105500 Sobic006G193700--Sobic010G151575 Sobic006G193700--Sobic005G023600 Sobic006G193700--Sobic002G224000 Sobic005G212900 Sobic005G212900 Sobic006G193700--Sobic005G212900 Sobic006G193700--Sobic004G197200 Sobic006G193700--Sobic002G121800 Sobic006G193700--Sobic002G007900 Sobic004G041800--Sobic004G080000 Sobic004G041800--Sobic001G466100 Sobic004G041800--Sobic007G146300 Sobic004G041800--Sobic010G276200 Sobic004G041800--Sobic005G209300 Sobic010G034300 Sobic010G034300 Sobic004G041800--Sobic010G034300 Sobic004G041800--Sobic010G176400 Sobic009G252000 Sobic009G252000 Sobic004G041800--Sobic009G252000 Sobic009G091000 Sobic009G091000 Sobic004G041800--Sobic009G091000 Sobic010G151575--Sobic004G359900 Sobic010G151575--Sobic006G105500 Sobic010G151575--Sobic002G224000 Sobic010G151575--Sobic004G197200 Sobic010G151575--Sobic001G539940 Sobic010G151575--Sobic010G089900 Sobic010G151575--Sobic002G007900 Sobic010G151575--Sobic006G193700 Sobic010G151575--Sobic002G121800
Octagon: transcription factors


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