Gene annotation
Transcriptome id Sobic.006G122100.2,Sobic.006G122100.3,Sobic.006G122100.1
Synonym OTP82, Sb06g020256
Functional annotation pentatricopeptide, putative, expressed
UniProt C5YAS5
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF763
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08070 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os12g01850.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a056310
Brachypodium -
Barley -
Wheat TraesCS2A02G325000 , TraesCS2B02G357300
Populus -


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cDNA sequences
Sobic.006G122100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G017900 OsFBD13 - F-box and FBD domain containing protein, expressed -
2 Sobic.001G044600 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
3 Sobic.005G068200 expressed protein -
4 Sobic.002G036500 ZOS7-02 - C2H2 zinc finger protein, expressed -
5 Sobic.002G257150 - -
6 Sobic.010G256866 - -
7 Sobic.005G030266 - -
8 Sobic.004G058400 RNA binding protein, putative, expressed -
9 Sobic.001G329001 - K03129: transcription initiation factor TFIID subunit 4
10 Sobic.001G176700 CBS domain containing protein, expressed -
11 Sobic.010G060400 leucoanthocyanidin dioxygenase, putative, expressed -
12 Sobic.004G197700 expressed protein -
13 Sobic.003G309500 PTAC12(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PTAC12, putative, expressed -
14 Sobic.006G087250 - -
15 Sobic.005G068300 - -
16 Sobic.007G007600 OsFBL38 - F-box domain and LRR containing protein, expressed -
17 Sobic.005G132100 serine/threonine-protein kinase, putative, expressed -
18 Sobic.004G248200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G273800 cytochrome P450, putative, expressed -
20 Sobic.007G226300 expressed protein -


Gene co-expression network
sample Sobic006G122100 Sobic006G122100 Sobic005G017900 Sobic005G017900 Sobic006G122100--Sobic005G017900 Sobic001G044600 Sobic001G044600 Sobic006G122100--Sobic001G044600 Sobic005G068200 Sobic005G068200 Sobic006G122100--Sobic005G068200 Sobic002G036500 Sobic002G036500 Sobic006G122100--Sobic002G036500 Sobic002G257150 Sobic002G257150 Sobic006G122100--Sobic002G257150 Sobic010G256866 Sobic010G256866 Sobic006G122100--Sobic010G256866 Sobic005G030266 Sobic005G030266 Sobic006G122100--Sobic005G030266 Sobic004G058400 Sobic004G058400 Sobic006G122100--Sobic004G058400 Sobic001G329001 Sobic001G329001 Sobic006G122100--Sobic001G329001 Sobic006G247400 Sobic006G247400 Sobic005G017900--Sobic006G247400 Sobic007G084400 Sobic007G084400 Sobic005G017900--Sobic007G084400 Sobic001G048300 Sobic001G048300 Sobic005G017900--Sobic001G048300 Sobic005G008101 Sobic005G008101 Sobic005G017900--Sobic005G008101 Sobic006G087250 Sobic006G087250 Sobic005G017900--Sobic006G087250 Sobic003G137300 Sobic003G137300 Sobic005G017900--Sobic003G137300 Sobic003G159000 Sobic003G159000 Sobic005G017900--Sobic003G159000 Sobic003G089700 Sobic003G089700 Sobic005G017900--Sobic003G089700 Sobic009G069450 Sobic009G069450 Sobic005G017900--Sobic009G069450 Sobic001G044600--Sobic006G122100 Sobic006G101600 Sobic006G101600 Sobic001G044600--Sobic006G101600 Sobic006G209700 Sobic006G209700 Sobic001G044600--Sobic006G209700 Sobic004G248200 Sobic004G248200 Sobic001G044600--Sobic004G248200 Sobic004G227700 Sobic004G227700 Sobic001G044600--Sobic004G227700 Sobic001G167800 Sobic001G167800 Sobic001G044600--Sobic001G167800 Sobic003G137200 Sobic003G137200 Sobic001G044600--Sobic003G137200 Sobic003G413201 Sobic003G413201 Sobic001G044600--Sobic003G413201 Sobic005G160500 Sobic005G160500 Sobic001G044600--Sobic005G160500 Sobic005G068200--Sobic005G030266 Sobic001G249900 Sobic001G249900 Sobic005G068200--Sobic001G249900 Sobic006G147350 Sobic006G147350 Sobic005G068200--Sobic006G147350 Sobic006G130100 Sobic006G130100 Sobic005G068200--Sobic006G130100 Sobic006G093550 Sobic006G093550 Sobic005G068200--Sobic006G093550 Sobic003G380800 Sobic003G380800 Sobic005G068200--Sobic003G380800 Sobic010G133225 Sobic010G133225 Sobic005G068200--Sobic010G133225 Sobic005G166900 Sobic005G166900 Sobic005G068200--Sobic005G166900 Sobic003G393600 Sobic003G393600 Sobic005G068200--Sobic003G393600 Sobic007G007600 Sobic007G007600 Sobic002G036500--Sobic007G007600 Sobic006G141400 Sobic006G141400 Sobic002G036500--Sobic006G141400 Sobic007G064000 Sobic007G064000 Sobic002G036500--Sobic007G064000 Sobic006G151100 Sobic006G151100 Sobic002G036500--Sobic006G151100 Sobic002G208850 Sobic002G208850 Sobic002G036500--Sobic002G208850 Sobic002G036500--Sobic001G329001 Sobic002G086700 Sobic002G086700 Sobic002G036500--Sobic002G086700 Sobic002G036500--Sobic002G257150 Sobic002G175700 Sobic002G175700 Sobic002G036500--Sobic002G175700 Sobic002G257150--Sobic001G329001 Sobic005G132100 Sobic005G132100 Sobic002G257150--Sobic005G132100 Sobic003G410000 Sobic003G410000 Sobic002G257150--Sobic003G410000 Sobic002G257150--Sobic004G248200 Sobic002G257150--Sobic004G058400 Sobic004G242800 Sobic004G242800 Sobic002G257150--Sobic004G242800 Sobic002G076300 Sobic002G076300 Sobic002G257150--Sobic002G076300 Sobic004G206600 Sobic004G206600 Sobic002G257150--Sobic004G206600 Sobic002G257150--Sobic002G086700 Sobic009G036366 Sobic009G036366 Sobic010G256866--Sobic009G036366 Sobic010G256866--Sobic006G151100 Sobic010G256866--Sobic006G141400 Sobic006G246400 Sobic006G246400 Sobic010G256866--Sobic006G246400 Sobic010G256866--Sobic002G208850 Sobic010G256866--Sobic002G036500 Sobic009G223000 Sobic009G223000 Sobic010G256866--Sobic009G223000 Sobic010G256866--Sobic001G329001 Sobic010G256866--Sobic002G086700 Sobic005G030266--Sobic005G068200 Sobic005G030266--Sobic001G249900 Sobic005G030266--Sobic006G093550 Sobic010G107901 Sobic010G107901 Sobic005G030266--Sobic010G107901 Sobic005G030266--Sobic010G133225 Sobic002G397700 Sobic002G397700 Sobic005G030266--Sobic002G397700 Sobic004G234766 Sobic004G234766 Sobic005G030266--Sobic004G234766 Sobic005G030266--Sobic006G130100 Sobic005G030266--Sobic003G380800 Sobic004G250400 Sobic004G250400 Sobic004G058400--Sobic004G250400 Sobic004G058400--Sobic001G329001 Sobic004G058400--Sobic003G410000 Sobic008G177100 Sobic008G177100 Sobic004G058400--Sobic008G177100 Sobic009G094200 Sobic009G094200 Sobic004G058400--Sobic009G094200 Sobic006G134300 Sobic006G134300 Sobic004G058400--Sobic006G134300 Sobic004G082600 Sobic004G082600 Sobic004G058400--Sobic004G082600 Sobic001G001800 Sobic001G001800 Sobic004G058400--Sobic001G001800 Sobic004G058400--Sobic004G227700 Sobic001G329001--Sobic003G410000 Sobic001G329001--Sobic004G058400 Sobic001G329001--Sobic002G086700 Sobic001G329001--Sobic002G257150 Sobic001G329001--Sobic002G076300 Sobic001G329001--Sobic008G177100 Sobic010G195000 Sobic010G195000 Sobic001G329001--Sobic010G195000 Sobic003G347560 Sobic003G347560 Sobic001G329001--Sobic003G347560 Sobic001G329001--Sobic006G134300
Octagon: transcription factors


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