Gene annotation
| Transcriptome id | Sobic.006G185800.1 |
|---|---|
| Synonym | Sb06g025980, SBT1.3, ATSBT1.3 |
| Functional annotation | OsSub45 - Putative Subtilisin homologue, expressed |
| UniProt | C5YE56 |
| Pfam | PF02225 PF05922 PF00082 |
| Panther DB | PTHR10795 PTHR10795:SF322 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0006508; proteolysis GO:0004252serine-type endopeptidase activity |
Orthologs (automatic annotation)
| TAIR | AT5G51750 : subtilase 1.3 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g48416.1 : OsSub45 - Putative Subtilisin homologue, expressed |
| MaizeGDB (Corn) | Zm00025a056746 , Zm00025a033027 , Zm00025a027719 |
| Brachypodium | KQJ84132 , KQK23552 , KQK14234 |
| Barley | HORVU2Hr1G094670.1 , HORVU7Hr1G090870.1 , HORVU7Hr1G090870.2 , HORVU6Hr1G032770.9 , HORVU6Hr1G032770.8 , HORVU6Hr1G032770.6 , HORVU6Hr1G032770.4 , HORVU6Hr1G032770.2 , HORVU6Hr1G081750.2 , HORVU6Hr1G081750.1 , HORVU6Hr1G032770.15 , HORVU6Hr1G032770.14 , HORVU6Hr1G032770.12 , HORVU6Hr1G032770.11 , HORVU6Hr1G032770.10 |
| Wheat | TraesCS7B02G283300 , TraesCS5D02G194300 , TraesCS6A02G161600 , TraesCS7D02G377700 , TraesCS5B02G186700 , TraesCS6A02G337900 , TraesCS7A02G381400 , TraesCS5A02G196900 |
| Populus | - |
JBrowse
| Sobic.006G185800 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G204100 | kelch repeat protein, putative, expressed | - |
| 2 | Sobic.001G074000 | receptor protein kinase CLAVATA1 precursor, putative, expressed | - |
| 3 | Sobic.010G173700 | tetraspanin family protein, putative, expressed | - |
| 4 | Sobic.009G129700 | serine/threonine-protein kinase, putative, expressed | - |
| 5 | Sobic.003G070600 | oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed | - |
| 6 | Sobic.001G221900 | 3-ketoacyl-CoA synthase precursor, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 7 | Sobic.003G019900 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 8 | Sobic.009G235700 | transporter family protein, putative, expressed | K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8 |
| 9 | Sobic.010G020600 | Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed | - |
| 10 | Sobic.010G014500 | aspartic protease, putative, expressed | - |
| 11 | Sobic.001G298800 | ternary complex factor MIP1, putative, expressed | - |
| 12 | Sobic.006G241800 | receptor kinase, putative, expressed | - |
| 13 | Sobic.004G344100 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 14 | Sobic.006G058000 | OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed | K16297: serine carboxypeptidase-like clade II |
| 15 | Sobic.005G104100 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 16 | Sobic.001G199400 | monocopper oxidase, putative, expressed | - |
| 17 | Sobic.007G065300 | homeobox and START domains containing protein, putative, expressed | K09338: homeobox-leucine zipper protein |
| 18 | Sobic.001G079900 | expressed protein | - |
| 19 | Sobic.003G018700 | CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 20 | Sobic.002G216600 | "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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