Gene annotation
Transcriptome id Sobic.006G201900.3,Sobic.006G201900.2
Synonym
Functional annotation tRNA-splicing endonuclease positive effector-related, putative, expressed
UniProt A0A1Z5RES9 , H0I494 , A0A1Z5RF95
Pfam PF13086 PF13087
Panther DB PTHR10887 PTHR10887:SF372
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65810 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g51090.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a009954
Brachypodium PNT61766 , KQK07086
Barley HORVU2Hr1G102370.9 , HORVU2Hr1G102370.8 , HORVU2Hr1G102370.7 , HORVU2Hr1G102370.5 , HORVU5Hr1G077070.18 , HORVU5Hr1G077070.19 , HORVU5Hr1G077070.12 , HORVU5Hr1G077070.10 , HORVU5Hr1G077070.11 , HORVU5Hr1G077070.16 , HORVU5Hr1G077070.17 , HORVU5Hr1G077070.14 , HORVU5Hr1G077070.15 , HORVU2Hr1G102300.9 , HORVU2Hr1G102300.10 , HORVU2Hr1G102300.11 , HORVU2Hr1G102300.13 , HORVU5Hr1G077070.23 , HORVU5Hr1G077070.22 , HORVU5Hr1G077070.21 , HORVU5Hr1G077070.20 , HORVU5Hr1G077070.27 , HORVU5Hr1G077070.26 , HORVU5Hr1G077070.25 , HORVU5Hr1G077070.24 , HORVU5Hr1G077070.29 , HORVU5Hr1G077070.28 , HORVU7Hr1G030630.1 , HORVU7Hr1G030630.3 , HORVU7Hr1G030630.2 , HORVU7Hr1G030630.4 , HORVU5Hr1G077070.13 , HORVU2Hr1G102370.17 , HORVU2Hr1G102370.16 , HORVU2Hr1G102370.15 , HORVU2Hr1G102370.14 , HORVU2Hr1G102370.13 , HORVU2Hr1G102370.12 , HORVU2Hr1G102370.11 , HORVU2Hr1G102370.10 , HORVU5Hr1G077070.30 , HORVU5Hr1G077070.31 , HORVU5Hr1G077070.32 , HORVU5Hr1G077070.33 , HORVU5Hr1G077070.34 , HORVU5Hr1G077070.35 , HORVU5Hr1G077070.36 , HORVU2Hr1G102410.10 , HORVU2Hr1G102410.11 , HORVU2Hr1G102410.12 , HORVU2Hr1G102410.13 , HORVU2Hr1G102410.14 , HORVU2Hr1G102410.15 , HORVU2Hr1G102410.16 , HORVU2Hr1G102410.17 , HORVU2Hr1G102410.2 , HORVU2Hr1G102410.3 , HORVU2Hr1G102410.1 , HORVU2Hr1G102410.6 , HORVU2Hr1G102410.7 , HORVU2Hr1G102410.4 , HORVU2Hr1G102410.5 , HORVU2Hr1G102300.2 , HORVU2Hr1G102300.3 , HORVU2Hr1G102300.6 , HORVU5Hr1G077070.1 , HORVU5Hr1G077070.2 , HORVU5Hr1G077070.3 , HORVU5Hr1G077070.4 , HORVU5Hr1G077070.5 , HORVU5Hr1G077070.6 , HORVU5Hr1G077070.7 , HORVU5Hr1G077070.8 , HORVU5Hr1G077070.9 , HORVU2Hr1G102300.1
Wheat TraesCS2B02G463200 , TraesCS2D02G441100 , TraesCS2B02G462900 , TraesCS7B02G053400 , TraesCS5D02G298000 , TraesCS5D02G298000 , TraesCS2B02G462700 , TraesCS7B02G053400 , TraesCS2B02G493400 , TraesCS5D02G298200 , TraesCS5D02G298200 , TraesCS5D02G298200 , TraesCS5B02G289800 , TraesCS7D02G151500 , TraesCS2D02G440700 , TraesCS2B02G462400 , TraesCS2D02G440100 , TraesCS2D02G440100 , TraesCS2B02G463000 , TraesCS2D02G441300 , TraesCS2A02G442300 , TraesCS2A02G442300 , TraesCS2D02G470600 , TraesCS2D02G440800 , TraesCS2B02G463400 , TraesCS2B02G462500 , TraesCS2D02G440200 , TraesCS2B02G462500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G402500 expressed protein -
2 Sobic.003G223800 transmembrane amino acid transporter protein, putative, expressed -
3 Sobic.006G199700 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
4 Sobic.002G019750 - -
5 Sobic.003G435400 OsDegp14 - Putative Deg protease homologue, expressed -
6 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
7 Sobic.005G216800 RNA recognition motif containing protein, expressed -
8 Sobic.003G392550 - -
9 Sobic.009G000400 expressed protein -
10 Sobic.001G450800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
11 Sobic.003G177800 tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.005G127300 expressed protein K14289: exportin-5
13 Sobic.003G432900 RNA recognition motif containing protein, putative, expressed -
14 Sobic.002G115500 PHD finger protein, putative, expressed -
15 Sobic.001G106200 Homeobox domain containing protein, expressed -
16 Sobic.001G430500 dynamin family protein, putative, expressed -
17 Sobic.001G307200 exonuclease, putative, expressed -
18 Sobic.003G429500 - -
19 Sobic.006G202800 - -
20 Sobic.010G116700 - -


Gene co-expression network
sample Sobic006G201900 Sobic006G201900 Sobic003G402500 Sobic003G402500 Sobic006G201900--Sobic003G402500 Sobic003G223800 Sobic003G223800 Sobic006G201900--Sobic003G223800 Sobic006G199700 Sobic006G199700 Sobic006G201900--Sobic006G199700 Sobic002G019750 Sobic002G019750 Sobic006G201900--Sobic002G019750 Sobic003G435400 Sobic003G435400 Sobic006G201900--Sobic003G435400 Sobic001G494100 Sobic001G494100 Sobic006G201900--Sobic001G494100 Sobic005G216800 Sobic005G216800 Sobic006G201900--Sobic005G216800 Sobic003G392550 Sobic003G392550 Sobic006G201900--Sobic003G392550 Sobic009G000400 Sobic009G000400 Sobic006G201900--Sobic009G000400 Sobic003G402500--Sobic006G201900 Sobic008G000800 Sobic008G000800 Sobic003G402500--Sobic008G000800 Sobic003G277900 Sobic003G277900 Sobic003G402500--Sobic003G277900 Sobic001G085700 Sobic001G085700 Sobic003G402500--Sobic001G085700 Sobic004G053300 Sobic004G053300 Sobic003G402500--Sobic004G053300 Sobic003G402500--Sobic001G494100 Sobic001G321900 Sobic001G321900 Sobic003G402500--Sobic001G321900 Sobic007G207600 Sobic007G207600 Sobic003G402500--Sobic007G207600 Sobic002G205900 Sobic002G205900 Sobic003G402500--Sobic002G205900 Sobic003G385000 Sobic003G385000 Sobic003G223800--Sobic003G385000 Sobic003G223800--Sobic006G199700 Sobic004G098800 Sobic004G098800 Sobic003G223800--Sobic004G098800 Sobic010G134700 Sobic010G134700 Sobic003G223800--Sobic010G134700 Sobic003G223800--Sobic003G435400 Sobic001G284425 Sobic001G284425 Sobic003G223800--Sobic001G284425 Sobic010G220400 Sobic010G220400 Sobic003G223800--Sobic010G220400 Sobic008G041450 Sobic008G041450 Sobic003G223800--Sobic008G041450 Sobic002G373600 Sobic002G373600 Sobic003G223800--Sobic002G373600 Sobic006G199700--Sobic003G435400 Sobic006G199700--Sobic002G373600 Sobic006G199700--Sobic003G385000 Sobic006G199700--Sobic001G284425 Sobic006G069200 Sobic006G069200 Sobic006G199700--Sobic006G069200 Sobic006G199700--Sobic003G223800 Sobic008G010900 Sobic008G010900 Sobic006G199700--Sobic008G010900 Sobic006G199700--Sobic004G098800 Sobic006G199700--Sobic002G019750 Sobic002G019500 Sobic002G019500 Sobic002G019750--Sobic002G019500 Sobic007G070500 Sobic007G070500 Sobic002G019750--Sobic007G070500 Sobic001G489150 Sobic001G489150 Sobic002G019750--Sobic001G489150 Sobic002G019750--Sobic006G199700 Sobic006G223800 Sobic006G223800 Sobic002G019750--Sobic006G223800 Sobic008G155600 Sobic008G155600 Sobic002G019750--Sobic008G155600 Sobic005G170700 Sobic005G170700 Sobic002G019750--Sobic005G170700 Sobic002G106000 Sobic002G106000 Sobic002G019750--Sobic002G106000 Sobic005G064700 Sobic005G064700 Sobic002G019750--Sobic005G064700 Sobic003G435400--Sobic006G199700 Sobic001G414100 Sobic001G414100 Sobic003G435400--Sobic001G414100 Sobic006G096800 Sobic006G096800 Sobic003G435400--Sobic006G096800 Sobic002G290100 Sobic002G290100 Sobic003G435400--Sobic002G290100 Sobic003G435400--Sobic004G098800 Sobic003G435400--Sobic002G373600 Sobic003G392275 Sobic003G392275 Sobic003G435400--Sobic003G392275 Sobic003G435400--Sobic010G134700 Sobic003G435400--Sobic003G223800 Sobic006G046600 Sobic006G046600 Sobic001G494100--Sobic006G046600 Sobic008G169400 Sobic008G169400 Sobic001G494100--Sobic008G169400 Sobic005G204100 Sobic005G204100 Sobic001G494100--Sobic005G204100 Sobic004G227500 Sobic004G227500 Sobic001G494100--Sobic004G227500 Sobic001G494100--Sobic003G277900 Sobic006G262100 Sobic006G262100 Sobic001G494100--Sobic006G262100 Sobic002G216600 Sobic002G216600 Sobic001G494100--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic001G494100--Sobic004G199700 Sobic001G315400 Sobic001G315400 Sobic001G494100--Sobic001G315400 Sobic006G237500 Sobic006G237500 Sobic005G216800--Sobic006G237500 Sobic005G123400 Sobic005G123400 Sobic005G216800--Sobic005G123400 Sobic002G342300 Sobic002G342300 Sobic005G216800--Sobic002G342300 Sobic010G237650 Sobic010G237650 Sobic005G216800--Sobic010G237650 Sobic002G235900 Sobic002G235900 Sobic005G216800--Sobic002G235900 Sobic009G102000 Sobic009G102000 Sobic005G216800--Sobic009G102000 Sobic003G397100 Sobic003G397100 Sobic005G216800--Sobic003G397100 Sobic003G194800 Sobic003G194800 Sobic005G216800--Sobic003G194800 Sobic006G170900 Sobic006G170900 Sobic005G216800--Sobic006G170900 Sobic009G122500 Sobic009G122500 Sobic003G392550--Sobic009G122500 Sobic003G346400 Sobic003G346400 Sobic003G392550--Sobic003G346400 Sobic003G036500 Sobic003G036500 Sobic003G392550--Sobic003G036500 Sobic001G012900 Sobic001G012900 Sobic003G392550--Sobic001G012900 Sobic003G392550--Sobic001G085700 Sobic004G254800 Sobic004G254800 Sobic003G392550--Sobic004G254800 Sobic001G335000 Sobic001G335000 Sobic003G392550--Sobic001G335000 Sobic004G060300 Sobic004G060300 Sobic003G392550--Sobic004G060300 Sobic002G115500 Sobic002G115500 Sobic003G392550--Sobic002G115500 Sobic009G074700 Sobic009G074700 Sobic009G000400--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic009G000400--Sobic006G028700 Sobic009G040800 Sobic009G040800 Sobic009G000400--Sobic009G040800 Sobic006G180700 Sobic006G180700 Sobic009G000400--Sobic006G180700 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic005G040900 Sobic005G040900 Sobic009G000400--Sobic005G040900 Sobic010G279900 Sobic010G279900 Sobic009G000400--Sobic010G279900 Sobic009G000400--Sobic001G085700
Octagon: transcription factors


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