Gene annotation
Transcriptome id Sobic.006G211500.2,Sobic.006G211500.1
Synonym GA biosynthetic enzyme, ATKS1, KS, GA2, KS1, Sb06g028220, SbKS1, ATKS
Functional annotation "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants" (PubMedID : 24924234)
ent-kaurene synthase, chloroplast precursor, putative, expressed
UniProt A0A1B6PN62
Pfam PF03936 PF01397
Panther DB PTHR31739:SF5 PTHR31739
NCBI CDD -
KEGG Orthology K04121; ent-kaurene synthase
Gene Ontology GO:0000287; magnesium ion binding GO:0008152metabolic process GO:0010333terpene synthase activity GO:0016829lyase activity


Orthologs (automatic annotation)
TAIR AT1G79460 : Terpenoid cyclases/Protein prenyltransferases superfamily protein
RAP-DB (Rice) LOC_Os04g52230.1 : ent-kaurene synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033469 , Zm00025a009825
Brachypodium KQJ84541 , PNT61834
Barley HORVU2Hr1G099440.14 , HORVU2Hr1G099440.15 , HORVU2Hr1G099440.16 , HORVU2Hr1G099440.17 , HORVU2Hr1G099440.12 , HORVU2Hr1G099440.13 , HORVU2Hr1G099440.18 , HORVU2Hr1G099440.19 , HORVU2Hr1G099480.21 , HORVU2Hr1G099480.18 , HORVU2Hr1G099480.19 , HORVU2Hr1G099480.10 , HORVU2Hr1G099480.11 , HORVU2Hr1G099480.12 , HORVU2Hr1G099480.13 , HORVU2Hr1G099480.14 , HORVU2Hr1G099480.15 , HORVU2Hr1G099480.17 , HORVU2Hr1G099480.22 , HORVU2Hr1G099440.69 , HORVU2Hr1G099440.68 , HORVU2Hr1G099440.65 , HORVU2Hr1G099440.64 , HORVU2Hr1G099440.67 , HORVU2Hr1G099440.66 , HORVU2Hr1G099440.61 , HORVU2Hr1G099440.60 , HORVU2Hr1G099440.63 , HORVU2Hr1G099440.62 , HORVU2Hr1G099440.29 , HORVU2Hr1G099440.28 , HORVU2Hr1G099440.26 , HORVU2Hr1G099480.29 , HORVU2Hr1G099480.25 , HORVU2Hr1G099480.24 , HORVU2Hr1G099480.27 , HORVU2Hr1G099480.26 , HORVU2Hr1G099480.20 , HORVU2Hr1G099480.23 , HORVU2Hr1G099440.72 , HORVU2Hr1G099440.73 , HORVU2Hr1G099440.70 , HORVU2Hr1G099440.71 , HORVU2Hr1G099440.74 , HORVU2Hr1G099480.8 , HORVU2Hr1G099480.9 , HORVU2Hr1G099480.2 , HORVU2Hr1G099480.3 , HORVU2Hr1G099480.1 , HORVU2Hr1G099480.6 , HORVU2Hr1G099480.7 , HORVU2Hr1G099480.4 , HORVU2Hr1G099480.5 , HORVU2Hr1G099480.30 , HORVU2Hr1G099440.48 , HORVU2Hr1G099440.38 , HORVU2Hr1G099440.36 , HORVU2Hr1G099440.37 , HORVU2Hr1G099440.34 , HORVU2Hr1G099440.35 , HORVU2Hr1G099440.32 , HORVU2Hr1G099440.33 , HORVU2Hr1G099440.30 , HORVU2Hr1G099440.49 , HORVU2Hr1G099480.31 , HORVU2Hr1G099440.43 , HORVU2Hr1G099440.42 , HORVU2Hr1G099440.41 , HORVU2Hr1G099440.40 , HORVU2Hr1G099440.45 , HORVU2Hr1G099440.44 , HORVU2Hr1G099440.8 , HORVU2Hr1G099440.9 , HORVU2Hr1G099440.6 , HORVU2Hr1G099440.7 , HORVU2Hr1G099440.4 , HORVU2Hr1G099440.5 , HORVU2Hr1G099440.2 , HORVU2Hr1G099440.3 , HORVU2Hr1G099440.1 , HORVU2Hr1G099440.25 , HORVU2Hr1G099440.27 , HORVU2Hr1G099440.58 , HORVU2Hr1G099440.59 , HORVU2Hr1G099440.50 , HORVU2Hr1G099440.52 , HORVU2Hr1G099440.53 , HORVU2Hr1G099440.54 , HORVU2Hr1G099440.55 , HORVU2Hr1G099440.56 , HORVU2Hr1G099440.57
Wheat TraesCS2D02G423300 , TraesCS2D02G423100 , TraesCS2D02G423300 , TraesCS2D02G423300 , TraesCS2D02G423300 , TraesCS2D02G423300 , TraesCS2B02G450000 , TraesCS6B02G034000 , TraesCS2B02G533600 , TraesCS2D02G506000 , TraesCS2B02G445200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G189000 protein with a conserved N-terminal region, putative, expressed -
2 Sobic.007G208600 leucine rich repeat containing protein, expressed -
3 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
4 Sobic.001G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLA2 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
5 Sobic.005G225400 expressed protein -
6 Sobic.002G288000 bromodomain domain containing protein, expressed K11723: bromodomain-containing protein 7
7 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
8 Sobic.008G153000 MATH domain containing protein, expressed -
9 Sobic.007G095200 ATPase, AFG1 family domain containing protein, expressed K18798: AFG1, peroxisome-assembly ATPase
10 Sobic.001G319400 - -
11 Sobic.007G026000 ATBET9, putative, expressed -
12 Sobic.008G042600 N-acetylglucosaminyltransferase I, putative, expressed K00726: alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
13 Sobic.009G137100 bZIP transcription factor domain containing protein, expressed -
14 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
15 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
16 Sobic.005G118600 NB-ARC domain containing protein, expressed -
17 Sobic.007G041500 diacylglycerol kinase, putative, expressed -
18 Sobic.007G079200 exonuclease, putative, expressed -
19 Sobic.006G175400 OsFBK22 - F-box domain and kelch repeat containing protein, expressed -
20 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein


Gene co-expression network
sample Sobic006G211500 Sobic006G211500 Sobic010G189000 Sobic010G189000 Sobic006G211500--Sobic010G189000 Sobic007G208600 Sobic007G208600 Sobic006G211500--Sobic007G208600 Sobic006G046700 Sobic006G046700 Sobic006G211500--Sobic006G046700 Sobic001G252700 Sobic001G252700 Sobic006G211500--Sobic001G252700 Sobic005G225400 Sobic005G225400 Sobic006G211500--Sobic005G225400 Sobic002G288000 Sobic002G288000 Sobic006G211500--Sobic002G288000 Sobic004G246100 Sobic004G246100 Sobic006G211500--Sobic004G246100 Sobic008G153000 Sobic008G153000 Sobic006G211500--Sobic008G153000 Sobic007G095200 Sobic007G095200 Sobic006G211500--Sobic007G095200 Sobic006G028200 Sobic006G028200 Sobic010G189000--Sobic006G028200 Sobic007G079200 Sobic007G079200 Sobic010G189000--Sobic007G079200 Sobic001G094000 Sobic001G094000 Sobic010G189000--Sobic001G094000 Sobic009G040700 Sobic009G040700 Sobic010G189000--Sobic009G040700 Sobic006G183800 Sobic006G183800 Sobic010G189000--Sobic006G183800 Sobic010G189000--Sobic002G288000 Sobic004G282400 Sobic004G282400 Sobic010G189000--Sobic004G282400 Sobic010G189000--Sobic006G046700 Sobic004G061900 Sobic004G061900 Sobic010G189000--Sobic004G061900 Sobic007G208600--Sobic006G211500 Sobic007G208600--Sobic010G189000 Sobic007G208600--Sobic008G153000 Sobic007G208600--Sobic006G046700 Sobic007G208600--Sobic001G252700 Sobic002G260400 Sobic002G260400 Sobic007G208600--Sobic002G260400 Sobic001G080900 Sobic001G080900 Sobic007G208600--Sobic001G080900 Sobic007G208600--Sobic004G246100 Sobic005G118600 Sobic005G118600 Sobic007G208600--Sobic005G118600 Sobic006G046700--Sobic008G153000 Sobic004G031700 Sobic004G031700 Sobic006G046700--Sobic004G031700 Sobic007G026000 Sobic007G026000 Sobic006G046700--Sobic007G026000 Sobic001G206100 Sobic001G206100 Sobic006G046700--Sobic001G206100 Sobic001G306900 Sobic001G306900 Sobic006G046700--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic001G405300 Sobic001G405300 Sobic006G046700--Sobic001G405300 Sobic006G013500 Sobic006G013500 Sobic006G046700--Sobic006G013500 Sobic001G252700--Sobic006G211500 Sobic001G252700--Sobic010G189000 Sobic004G213000 Sobic004G213000 Sobic001G252700--Sobic004G213000 Sobic001G252700--Sobic006G046700 Sobic003G036900 Sobic003G036900 Sobic001G252700--Sobic003G036900 Sobic001G257300 Sobic001G257300 Sobic001G252700--Sobic001G257300 Sobic001G252700--Sobic007G095200 Sobic001G252700--Sobic001G206100 Sobic001G252700--Sobic006G028200 Sobic005G225400--Sobic006G211500 Sobic004G330900 Sobic004G330900 Sobic005G225400--Sobic004G330900 Sobic009G229800 Sobic009G229800 Sobic005G225400--Sobic009G229800 Sobic005G163100 Sobic005G163100 Sobic005G225400--Sobic005G163100 Sobic007G041500 Sobic007G041500 Sobic005G225400--Sobic007G041500 Sobic005G225400--Sobic004G282400 Sobic007G202600 Sobic007G202600 Sobic005G225400--Sobic007G202600 Sobic002G058400 Sobic002G058400 Sobic005G225400--Sobic002G058400 Sobic006G058600 Sobic006G058600 Sobic005G225400--Sobic006G058600 Sobic006G138000 Sobic006G138000 Sobic002G288000--Sobic006G138000 Sobic002G288000--Sobic010G189000 Sobic002G288000--Sobic006G183800 Sobic001G518400 Sobic001G518400 Sobic002G288000--Sobic001G518400 Sobic003G401000 Sobic003G401000 Sobic002G288000--Sobic003G401000 Sobic002G423200 Sobic002G423200 Sobic002G288000--Sobic002G423200 Sobic002G288000--Sobic001G094000 Sobic004G325400 Sobic004G325400 Sobic002G288000--Sobic004G325400 Sobic002G288000--Sobic006G028200 Sobic008G149800 Sobic008G149800 Sobic004G246100--Sobic008G149800 Sobic004G246100--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic004G246100--Sobic007G061700 Sobic002G063900 Sobic002G063900 Sobic004G246100--Sobic002G063900 Sobic008G173100 Sobic008G173100 Sobic004G246100--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic004G246100--Sobic006G116100 Sobic004G246100--Sobic006G046700 Sobic009G137100 Sobic009G137100 Sobic004G246100--Sobic009G137100 Sobic004G246100--Sobic002G260400 Sobic008G153000--Sobic006G116100 Sobic008G153000--Sobic006G046700 Sobic008G153000--Sobic008G149800 Sobic002G264200 Sobic002G264200 Sobic008G153000--Sobic002G264200 Sobic001G155000 Sobic001G155000 Sobic008G153000--Sobic001G155000 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic008G153000--Sobic007G026000 Sobic010G069100 Sobic010G069100 Sobic008G153000--Sobic010G069100 Sobic007G095200--Sobic006G046700 Sobic003G336800 Sobic003G336800 Sobic007G095200--Sobic003G336800 Sobic007G185900 Sobic007G185900 Sobic007G095200--Sobic007G185900 Sobic007G095200--Sobic001G405300 Sobic007G095200--Sobic006G028200 Sobic005G059100 Sobic005G059100 Sobic007G095200--Sobic005G059100 Sobic001G296500 Sobic001G296500 Sobic007G095200--Sobic001G296500 Sobic004G012000 Sobic004G012000 Sobic007G095200--Sobic004G012000 Sobic007G095200--Sobic007G026000
Octagon: transcription factors


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