Gene annotation
Transcriptome id Sobic.007G095200.1
Synonym Sb07g009450
Functional annotation ATPase, AFG1 family domain containing protein, expressed
UniProt C5YJV6
Pfam PF03969
Panther DB PTHR12169 PTHR12169:SF6
NCBI CDD KOG2383; Predicted ATPase
KEGG Orthology K18798; AFG1, peroxisome-assembly ATPase
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT4G30490 : AFG1-like ATPase family protein
RAP-DB (Rice) LOC_Os08g16480.2 : ATPase, AFG1 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056541 , Zm00025a010606
Brachypodium KQJ95827 , KQJ95828 , KQJ95829 , KQJ95831 , KQJ95830
Barley HORVU1Hr1G082690.21 , HORVU1Hr1G082690.20 , HORVU1Hr1G082690.8 , HORVU1Hr1G082690.9 , HORVU1Hr1G082690.4 , HORVU1Hr1G082690.5 , HORVU1Hr1G082690.6 , HORVU1Hr1G082690.7 , HORVU1Hr1G082690.2 , HORVU1Hr1G082690.19 , HORVU1Hr1G082690.16 , HORVU1Hr1G082690.17 , HORVU1Hr1G082690.12 , HORVU1Hr1G082690.13 , HORVU1Hr1G082690.10 , HORVU1Hr1G082690.11
Wheat TraesCS1D02G379000 , TraesCS1A02G372400 , TraesCS1A02G372400 , TraesCS1D02G379000 , TraesCS1D02G379000 , TraesCS1D02G379000 , TraesCS1B02G392400 , TraesCS1B02G392400 , TraesCS1B02G392400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
2 Sobic.003G336800 expressed protein -
3 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
4 Sobic.001G405300 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed -
5 Sobic.006G028200 glycine-rich protein, putative, expressed -
6 Sobic.005G059100 bromodomain domain containing protein, expressed -
7 Sobic.001G296500 ARABIDILLO-1, putative, expressed -
8 Sobic.004G012000 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed -
9 Sobic.007G026000 ATBET9, putative, expressed -
10 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
11 Sobic.009G074700 heat shock protein binding protein, putative, expressed K09540: SEC63, translocation protein SEC63
12 Sobic.006G211500 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04121: ent-kaurene synthase
13 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
14 Sobic.004G031700 expressed protein -
15 Sobic.010G040800 RNA recognition motif containing protein, putative, expressed -
16 Sobic.007G043500 DNA topoisomerase 1, putative, expressed K03163: DNA topoisomerase I
17 Sobic.006G080300 SET domain containing protein, expressed -
18 Sobic.003G036900 glycine-rich protein, putative, expressed -
19 Sobic.006G123900 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
20 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4


Gene co-expression network
sample Sobic007G095200 Sobic007G095200 Sobic006G046700 Sobic006G046700 Sobic007G095200--Sobic006G046700 Sobic003G336800 Sobic003G336800 Sobic007G095200--Sobic003G336800 Sobic007G185900 Sobic007G185900 Sobic007G095200--Sobic007G185900 Sobic001G405300 Sobic001G405300 Sobic007G095200--Sobic001G405300 Sobic006G028200 Sobic006G028200 Sobic007G095200--Sobic006G028200 Sobic005G059100 Sobic005G059100 Sobic007G095200--Sobic005G059100 Sobic001G296500 Sobic001G296500 Sobic007G095200--Sobic001G296500 Sobic004G012000 Sobic004G012000 Sobic007G095200--Sobic004G012000 Sobic007G026000 Sobic007G026000 Sobic007G095200--Sobic007G026000 Sobic008G153000 Sobic008G153000 Sobic006G046700--Sobic008G153000 Sobic004G031700 Sobic004G031700 Sobic006G046700--Sobic004G031700 Sobic006G046700--Sobic007G026000 Sobic001G206100 Sobic001G206100 Sobic006G046700--Sobic001G206100 Sobic001G306900 Sobic001G306900 Sobic006G046700--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic006G046700--Sobic001G405300 Sobic006G013500 Sobic006G013500 Sobic006G046700--Sobic006G013500 Sobic004G088400 Sobic004G088400 Sobic003G336800--Sobic004G088400 Sobic008G129700 Sobic008G129700 Sobic003G336800--Sobic008G129700 Sobic002G061400 Sobic002G061400 Sobic003G336800--Sobic002G061400 Sobic010G174800 Sobic010G174800 Sobic003G336800--Sobic010G174800 Sobic003G336800--Sobic001G296500 Sobic010G202600 Sobic010G202600 Sobic003G336800--Sobic010G202600 Sobic010G199800 Sobic010G199800 Sobic003G336800--Sobic010G199800 Sobic006G128800 Sobic006G128800 Sobic003G336800--Sobic006G128800 Sobic007G008800 Sobic007G008800 Sobic003G336800--Sobic007G008800 Sobic004G196700 Sobic004G196700 Sobic007G185900--Sobic004G196700 Sobic002G157300 Sobic002G157300 Sobic007G185900--Sobic002G157300 Sobic007G078000 Sobic007G078000 Sobic007G185900--Sobic007G078000 Sobic010G260500 Sobic010G260500 Sobic007G185900--Sobic010G260500 Sobic002G313300 Sobic002G313300 Sobic007G185900--Sobic002G313300 Sobic008G054500 Sobic008G054500 Sobic007G185900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G185900--Sobic003G397800 Sobic005G149500 Sobic005G149500 Sobic007G185900--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic007G185900--Sobic003G187400 Sobic001G405300--Sobic006G046700 Sobic001G405300--Sobic007G026000 Sobic002G159200 Sobic002G159200 Sobic001G405300--Sobic002G159200 Sobic006G161000 Sobic006G161000 Sobic001G405300--Sobic006G161000 Sobic001G405300--Sobic005G059100 Sobic007G043500 Sobic007G043500 Sobic001G405300--Sobic007G043500 Sobic001G405300--Sobic006G013500 Sobic006G186400 Sobic006G186400 Sobic001G405300--Sobic006G186400 Sobic001G405300--Sobic004G031700 Sobic003G401000 Sobic003G401000 Sobic006G028200--Sobic003G401000 Sobic001G094000 Sobic001G094000 Sobic006G028200--Sobic001G094000 Sobic009G040700 Sobic009G040700 Sobic006G028200--Sobic009G040700 Sobic010G189000 Sobic010G189000 Sobic006G028200--Sobic010G189000 Sobic006G028200--Sobic003G187400 Sobic006G028200--Sobic006G046700 Sobic006G028200--Sobic001G296500 Sobic003G036900 Sobic003G036900 Sobic006G028200--Sobic003G036900 Sobic001G477800 Sobic001G477800 Sobic006G028200--Sobic001G477800 Sobic005G059100--Sobic007G043500 Sobic005G059100--Sobic007G026000 Sobic006G123900 Sobic006G123900 Sobic005G059100--Sobic006G123900 Sobic002G067800 Sobic002G067800 Sobic005G059100--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic005G059100--Sobic010G194700 Sobic006G080300 Sobic006G080300 Sobic005G059100--Sobic006G080300 Sobic005G059100--Sobic007G185900 Sobic005G059100--Sobic001G206100 Sobic005G059100--Sobic002G159200 Sobic001G296500--Sobic003G401000 Sobic001G296500--Sobic001G094000 Sobic003G084900 Sobic003G084900 Sobic001G296500--Sobic003G084900 Sobic001G296500--Sobic003G336800 Sobic010G166000 Sobic010G166000 Sobic001G296500--Sobic010G166000 Sobic001G296500--Sobic004G031700 Sobic002G158700 Sobic002G158700 Sobic001G296500--Sobic002G158700 Sobic001G514000 Sobic001G514000 Sobic001G296500--Sobic001G514000 Sobic001G296500--Sobic002G157300 Sobic005G154700 Sobic005G154700 Sobic004G012000--Sobic005G154700 Sobic004G012000--Sobic004G088400 Sobic004G012000--Sobic001G296500 Sobic008G117200 Sobic008G117200 Sobic004G012000--Sobic008G117200 Sobic004G012000--Sobic003G336800 Sobic003G239900 Sobic003G239900 Sobic004G012000--Sobic003G239900 Sobic004G026100 Sobic004G026100 Sobic004G012000--Sobic004G026100 Sobic002G197100 Sobic002G197100 Sobic004G012000--Sobic002G197100 Sobic004G012000--Sobic007G095200 Sobic007G026000--Sobic008G153000 Sobic007G026000--Sobic006G046700 Sobic007G026000--Sobic005G059100 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic002G153700 Sobic002G153700 Sobic007G026000--Sobic002G153700 Sobic007G026000--Sobic001G206100 Sobic007G026000--Sobic006G013500 Sobic007G026000--Sobic004G031700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.