Gene annotation
Transcriptome id Sobic.007G028900.4
Synonym Sb07g002510
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6PF74
Pfam PF13374
Panther DB PTHR36326 PTHR36326:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51280 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g03620.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a040392
Brachypodium KQJ94950 , PNT66586 , PNT66585
Barley HORVU5Hr1G088430.6 , HORVU5Hr1G088430.4 , HORVU5Hr1G088430.2 , HORVU5Hr1G088430.1 , HORVU5Hr1G088430.8 , HORVU5Hr1G088430.9 , HORVU7Hr1G074000.10 , HORVU7Hr1G074000.11 , HORVU7Hr1G074000.12 , HORVU7Hr1G074000.13 , HORVU7Hr1G074000.14 , HORVU7Hr1G074000.15 , HORVU7Hr1G074000.16 , HORVU5Hr1G088430.15 , HORVU5Hr1G088430.16 , HORVU5Hr1G088430.17 , HORVU5Hr1G088430.10 , HORVU5Hr1G088430.11 , HORVU5Hr1G088430.12 , HORVU7Hr1G074000.2 , HORVU7Hr1G074000.1 , HORVU7Hr1G074000.6 , HORVU7Hr1G074000.7 , HORVU7Hr1G074000.4 , HORVU7Hr1G074000.5 , HORVU7Hr1G074000.8 , HORVU7Hr1G074000.9
Wheat TraesCS5B02G360500 , TraesCS7B02G210200 , TraesCS7B02G210200 , TraesCS7D02G306900 , TraesCS5D02G367300 , TraesCS7A02G310300 , TraesCS7A02G310300 , TraesCS7A02G310300 , TraesCS5A02G358000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G038400 expressed protein -
2 Sobic.006G245200 OsFBX239 - F-box domain containing protein, expressed -
3 Sobic.003G377200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.004G097700 homeobox domain containing protein, expressed -
5 Sobic.003G284500 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
6 Sobic.004G180600 expressed protein K18172: COX assembly mitochondrial protein 2
7 Sobic.001G013600 expressed protein -
8 Sobic.007G208500 expressed protein -
9 Sobic.002G241000 expressed protein -
10 Sobic.002G366700 expressed protein -
11 Sobic.009G203400 IQ calmodulin-binding motif family protein, putative, expressed -
12 Sobic.006G186200 exostosin family domain containing protein, expressed -
13 Sobic.009G050100 ATKINESIN-13A/KINESIN-13A, putative, expressed K11091: U1 small nuclear ribonucleoprotein A
14 Sobic.002G339400 expressed protein -
15 Sobic.002G282100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
16 Sobic.004G107400 expressed protein -
17 Sobic.001G531900 cyclin-like F-box, putative, expressed -
18 Sobic.004G109500 - -
19 Sobic.002G363700 expressed protein -
20 Sobic.002G256500 expressed protein -


Gene co-expression network
sample Sobic007G028900 Sobic007G028900 Sobic002G038400 Sobic002G038400 Sobic007G028900--Sobic002G038400 Sobic006G245200 Sobic006G245200 Sobic007G028900--Sobic006G245200 Sobic003G377200 Sobic003G377200 Sobic007G028900--Sobic003G377200 Sobic004G097700 Sobic004G097700 Sobic007G028900--Sobic004G097700 Sobic003G284500 Sobic003G284500 Sobic007G028900--Sobic003G284500 Sobic004G180600 Sobic004G180600 Sobic007G028900--Sobic004G180600 Sobic001G013600 Sobic001G013600 Sobic007G028900--Sobic001G013600 Sobic007G208500 Sobic007G208500 Sobic007G028900--Sobic007G208500 Sobic002G241000 Sobic002G241000 Sobic007G028900--Sobic002G241000 Sobic007G076800 Sobic007G076800 Sobic002G038400--Sobic007G076800 Sobic002G366700 Sobic002G366700 Sobic002G038400--Sobic002G366700 Sobic002G339400 Sobic002G339400 Sobic002G038400--Sobic002G339400 Sobic010G087200 Sobic010G087200 Sobic002G038400--Sobic010G087200 Sobic001G494150 Sobic001G494150 Sobic002G038400--Sobic001G494150 Sobic002G282100 Sobic002G282100 Sobic002G038400--Sobic002G282100 Sobic007G206700 Sobic007G206700 Sobic002G038400--Sobic007G206700 Sobic001G428700 Sobic001G428700 Sobic002G038400--Sobic001G428700 Sobic006G186200 Sobic006G186200 Sobic002G038400--Sobic006G186200 Sobic006G108000 Sobic006G108000 Sobic006G245200--Sobic006G108000 Sobic006G245200--Sobic006G186200 Sobic008G163800 Sobic008G163800 Sobic006G245200--Sobic008G163800 Sobic003G406500 Sobic003G406500 Sobic006G245200--Sobic003G406500 Sobic007G153300 Sobic007G153300 Sobic006G245200--Sobic007G153300 Sobic004G156600 Sobic004G156600 Sobic006G245200--Sobic004G156600 Sobic004G061600 Sobic004G061600 Sobic006G245200--Sobic004G061600 Sobic006G245200--Sobic003G377200 Sobic004G107400 Sobic004G107400 Sobic006G245200--Sobic004G107400 Sobic001G267500 Sobic001G267500 Sobic003G377200--Sobic001G267500 Sobic003G377200--Sobic007G208500 Sobic003G377200--Sobic006G186200 Sobic006G163650 Sobic006G163650 Sobic003G377200--Sobic006G163650 Sobic003G377200--Sobic004G180600 Sobic003G390300 Sobic003G390300 Sobic003G377200--Sobic003G390300 Sobic009G203400 Sobic009G203400 Sobic003G377200--Sobic009G203400 Sobic005G076650 Sobic005G076650 Sobic003G377200--Sobic005G076650 Sobic003G377200--Sobic004G156600 Sobic004G097700--Sobic006G186200 Sobic003G407500 Sobic003G407500 Sobic004G097700--Sobic003G407500 Sobic006G273500 Sobic006G273500 Sobic004G097700--Sobic006G273500 Sobic004G097700--Sobic007G208500 Sobic004G097700--Sobic004G180600 Sobic004G097700--Sobic009G203400 Sobic008G098098 Sobic008G098098 Sobic004G097700--Sobic008G098098 Sobic004G097700--Sobic004G061600 Sobic004G097700--Sobic006G245200 Sobic003G128500 Sobic003G128500 Sobic003G284500--Sobic003G128500 Sobic007G072400 Sobic007G072400 Sobic003G284500--Sobic007G072400 Sobic004G109500 Sobic004G109500 Sobic003G284500--Sobic004G109500 Sobic009G088401 Sobic009G088401 Sobic003G284500--Sobic009G088401 Sobic009G050100 Sobic009G050100 Sobic003G284500--Sobic009G050100 Sobic002G173600 Sobic002G173600 Sobic003G284500--Sobic002G173600 Sobic003G284500--Sobic004G107400 Sobic003G284500--Sobic003G390300 Sobic010G152700 Sobic010G152700 Sobic003G284500--Sobic010G152700 Sobic004G180600--Sobic006G273500 Sobic004G180600--Sobic008G098098 Sobic004G180600--Sobic009G088401 Sobic007G016000 Sobic007G016000 Sobic004G180600--Sobic007G016000 Sobic008G119200 Sobic008G119200 Sobic004G180600--Sobic008G119200 Sobic004G180600--Sobic004G107400 Sobic004G180600--Sobic003G407500 Sobic004G180600--Sobic007G072400 Sobic005G209800 Sobic005G209800 Sobic004G180600--Sobic005G209800 Sobic006G255800 Sobic006G255800 Sobic001G013600--Sobic006G255800 Sobic001G013600--Sobic002G366700 Sobic010G027800 Sobic010G027800 Sobic001G013600--Sobic010G027800 Sobic009G155500 Sobic009G155500 Sobic001G013600--Sobic009G155500 Sobic006G169400 Sobic006G169400 Sobic001G013600--Sobic006G169400 Sobic006G258400 Sobic006G258400 Sobic001G013600--Sobic006G258400 Sobic001G402701 Sobic001G402701 Sobic001G013600--Sobic001G402701 Sobic001G013600--Sobic002G339400 Sobic001G013600--Sobic006G245200 Sobic007G208500--Sobic006G273500 Sobic007G208500--Sobic009G203400 Sobic007G208500--Sobic004G180600 Sobic007G208500--Sobic008G098098 Sobic007G208500--Sobic006G186200 Sobic002G256500 Sobic002G256500 Sobic007G208500--Sobic002G256500 Sobic007G208500--Sobic004G061600 Sobic004G043200 Sobic004G043200 Sobic007G208500--Sobic004G043200 Sobic007G208500--Sobic003G390300 Sobic001G227100 Sobic001G227100 Sobic002G241000--Sobic001G227100 Sobic004G063750 Sobic004G063750 Sobic002G241000--Sobic004G063750 Sobic006G082700 Sobic006G082700 Sobic002G241000--Sobic006G082700 Sobic007G135900 Sobic007G135900 Sobic002G241000--Sobic007G135900 Sobic002G059600 Sobic002G059600 Sobic002G241000--Sobic002G059600 Sobic003G438200 Sobic003G438200 Sobic002G241000--Sobic003G438200 Sobic001G298100 Sobic001G298100 Sobic002G241000--Sobic001G298100 Sobic002G295000 Sobic002G295000 Sobic002G241000--Sobic002G295000 Sobic010G212000 Sobic010G212000 Sobic002G241000--Sobic010G212000
Octagon: transcription factors


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