Gene annotation
Transcriptome id Sobic.007G067700.1,Sobic.007G067700.3
Synonym ATRBP45B, RBP45B, Sb07g005360
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PGE2 , A0A1B6PG44
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF333
NCBI CDD KOG0131; Splicing factor 3b, subunit 4 KOG0148Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G11650 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g53440.2,LOC_Os08g09100.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029968
Brachypodium KQJ95099
Barley HORVU7Hr1G066510.3 , HORVU7Hr1G066510.2 , HORVU7Hr1G066510.5 , HORVU7Hr1G066510.8 , HORVU7Hr1G066510.6 , HORVU7Hr1G066510.4 , HORVU7Hr1G066510.9 , HORVU7Hr1G066510.13 , HORVU7Hr1G066510.12 , HORVU7Hr1G066510.11 , HORVU7Hr1G066510.10 , HORVU7Hr1G066510.17 , HORVU7Hr1G066510.16 , HORVU7Hr1G066510.15 , HORVU7Hr1G066510.14 , HORVU7Hr1G066510.7
Wheat TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS7A02G295700 , TraesCS7B02G199000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G067700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G317300 CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
2 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
3 Sobic.002G204900 ZOS9-06 - C2H2 zinc finger protein, expressed -
4 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
5 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
7 Sobic.001G120500 toc64, putative, expressed -
8 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
9 Sobic.002G260900 protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
10 Sobic.006G148100 DUF647 domain containing protein, putative, expressed -
11 Sobic.007G165600 aminopeptidase, putative, expressed K01256: aminopeptidase N
12 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
13 Sobic.002G166300 peroxin-3 family protein, putative, expressed K13336: peroxin-3
14 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
15 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
16 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
17 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
18 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
19 Sobic.009G075800 serine/threonine protein phosphatase 5, putative, expressed K04460: serine/threonine-protein phosphatase 5
20 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase


Gene co-expression network
sample Sobic007G067700 Sobic007G067700 Sobic002G317300 Sobic002G317300 Sobic007G067700--Sobic002G317300 Sobic001G259000 Sobic001G259000 Sobic007G067700--Sobic001G259000 Sobic002G204900 Sobic002G204900 Sobic007G067700--Sobic002G204900 Sobic004G092500 Sobic004G092500 Sobic007G067700--Sobic004G092500 Sobic001G145400 Sobic001G145400 Sobic007G067700--Sobic001G145400 Sobic005G172500 Sobic005G172500 Sobic007G067700--Sobic005G172500 Sobic001G120500 Sobic001G120500 Sobic007G067700--Sobic001G120500 Sobic006G136400 Sobic006G136400 Sobic007G067700--Sobic006G136400 Sobic002G260900 Sobic002G260900 Sobic007G067700--Sobic002G260900 Sobic009G199200 Sobic009G199200 Sobic002G317300--Sobic009G199200 Sobic010G249300 Sobic010G249300 Sobic002G317300--Sobic010G249300 Sobic010G146600 Sobic010G146600 Sobic002G317300--Sobic010G146600 Sobic001G281600 Sobic001G281600 Sobic002G317300--Sobic001G281600 Sobic006G032900 Sobic006G032900 Sobic002G317300--Sobic006G032900 Sobic002G166300 Sobic002G166300 Sobic002G317300--Sobic002G166300 Sobic008G083000 Sobic008G083000 Sobic002G317300--Sobic008G083000 Sobic002G317300--Sobic007G067700 Sobic010G279700 Sobic010G279700 Sobic002G317300--Sobic010G279700 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic002G204900--Sobic007G067700 Sobic002G299000 Sobic002G299000 Sobic002G204900--Sobic002G299000 Sobic002G204900--Sobic002G317300 Sobic001G201400 Sobic001G201400 Sobic002G204900--Sobic001G201400 Sobic002G137400 Sobic002G137400 Sobic002G204900--Sobic002G137400 Sobic001G124200 Sobic001G124200 Sobic002G204900--Sobic001G124200 Sobic001G201500 Sobic001G201500 Sobic002G204900--Sobic001G201500 Sobic002G204900--Sobic002G260900 Sobic003G287100 Sobic003G287100 Sobic002G204900--Sobic003G287100 Sobic007G132100 Sobic007G132100 Sobic004G092500--Sobic007G132100 Sobic001G493200 Sobic001G493200 Sobic004G092500--Sobic001G493200 Sobic010G223300 Sobic010G223300 Sobic004G092500--Sobic010G223300 Sobic003G143200 Sobic003G143200 Sobic004G092500--Sobic003G143200 Sobic010G020400 Sobic010G020400 Sobic004G092500--Sobic010G020400 Sobic004G257100 Sobic004G257100 Sobic004G092500--Sobic004G257100 Sobic004G039600 Sobic004G039600 Sobic004G092500--Sobic004G039600 Sobic006G077200 Sobic006G077200 Sobic004G092500--Sobic006G077200 Sobic007G167900 Sobic007G167900 Sobic004G092500--Sobic007G167900 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic004G131300 Sobic004G131300 Sobic005G172500--Sobic004G131300 Sobic006G148100 Sobic006G148100 Sobic005G172500--Sobic006G148100 Sobic009G056200 Sobic009G056200 Sobic005G172500--Sobic009G056200 Sobic005G172500--Sobic001G493200 Sobic001G227400 Sobic001G227400 Sobic005G172500--Sobic001G227400 Sobic002G371300 Sobic002G371300 Sobic005G172500--Sobic002G371300 Sobic002G142900 Sobic002G142900 Sobic005G172500--Sobic002G142900 Sobic003G408600 Sobic003G408600 Sobic005G172500--Sobic003G408600 Sobic005G172500--Sobic004G257100 Sobic010G265300 Sobic010G265300 Sobic001G120500--Sobic010G265300 Sobic001G120500--Sobic005G172500 Sobic001G244300 Sobic001G244300 Sobic001G120500--Sobic001G244300 Sobic001G120500--Sobic001G493200 Sobic006G217000 Sobic006G217000 Sobic001G120500--Sobic006G217000 Sobic007G103100 Sobic007G103100 Sobic001G120500--Sobic007G103100 Sobic008G051200 Sobic008G051200 Sobic001G120500--Sobic008G051200 Sobic001G120500--Sobic009G056200 Sobic009G193500 Sobic009G193500 Sobic001G120500--Sobic009G193500 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic006G136400--Sobic004G131300 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic001G447300 Sobic001G447300 Sobic006G136400--Sobic001G447300 Sobic006G136400--Sobic002G142900 Sobic002G260900--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic002G260900--Sobic003G266001 Sobic002G260900--Sobic001G493200 Sobic004G113400 Sobic004G113400 Sobic002G260900--Sobic004G113400 Sobic004G021200 Sobic004G021200 Sobic002G260900--Sobic004G021200 Sobic008G103200 Sobic008G103200 Sobic002G260900--Sobic008G103200 Sobic010G004100 Sobic010G004100 Sobic002G260900--Sobic010G004100 Sobic003G394300 Sobic003G394300 Sobic002G260900--Sobic003G394300 Sobic006G237400 Sobic006G237400 Sobic002G260900--Sobic006G237400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.