Gene annotation
Transcriptome id Sobic.007G096900.1
Synonym SYN3, ATSYN3, ATRAD21.2
Functional annotation Rad21 / Rec8 like protein, putative, expressed
UniProt A0A1B6PH28
Pfam PF04824 PF04825
Panther DB PTHR12585 PTHR12585:SF35
NCBI CDD KOG1213; Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1
KEGG Orthology -
Gene Ontology GO:0000228; nuclear chromosome GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G59550 : Rad21/Rec8-like family protein
RAP-DB (Rice) LOC_Os08g16610.1 : Rad21 / Rec8 like protein, putative, expressed
MaizeGDB (Corn) Zm00025a054598
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G380000 THION28 - Plant thionin family protein precursor, expressed -
2 Sobic.001G513400 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
3 Sobic.001G538425 - -
4 Sobic.003G054800 expressed protein -
5 Sobic.003G233800 serine/threonine-protein kinase, putative, expressed -
6 Sobic.004G289900 expressed protein K15193: SPTY2D1, protein SPT2
7 Sobic.002G330200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
8 Sobic.005G185750 - -
9 Sobic.010G257800 peptidyl-prolyl cis-trans isomerase, putative, expressed -
10 Sobic.004G277900 - -
11 Sobic.010G187800 expressed protein -
12 Sobic.008G181900 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
13 Sobic.004G080800 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
14 Sobic.002G406801 - -
15 Sobic.008G168932 - -
16 Sobic.002G359100 expressed protein -
17 Sobic.002G021500 OsFBX209 - F-box domain containing protein, expressed -
18 Sobic.004G187400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
19 Sobic.004G095100 zinc knuckle family protein, expressed K03257: translation initiation factor 4A
20 Sobic.002G061300 OsFBX239 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic007G096900 Sobic007G096900 Sobic001G380000 Sobic001G380000 Sobic007G096900--Sobic001G380000 Sobic001G513400 Sobic001G513400 Sobic007G096900--Sobic001G513400 Sobic001G538425 Sobic001G538425 Sobic007G096900--Sobic001G538425 Sobic003G054800 Sobic003G054800 Sobic007G096900--Sobic003G054800 Sobic003G233800 Sobic003G233800 Sobic007G096900--Sobic003G233800 Sobic004G289900 Sobic004G289900 Sobic007G096900--Sobic004G289900 Sobic002G330200 Sobic002G330200 Sobic007G096900--Sobic002G330200 Sobic005G185750 Sobic005G185750 Sobic007G096900--Sobic005G185750 Sobic010G257800 Sobic010G257800 Sobic007G096900--Sobic010G257800 Sobic001G380000--Sobic003G233800 Sobic001G380000--Sobic001G513400 Sobic010G187800 Sobic010G187800 Sobic001G380000--Sobic010G187800 Sobic001G380000--Sobic003G054800 Sobic001G380000--Sobic004G289900 Sobic001G036200 Sobic001G036200 Sobic001G380000--Sobic001G036200 Sobic002G405300 Sobic002G405300 Sobic001G380000--Sobic002G405300 Sobic006G176200 Sobic006G176200 Sobic001G380000--Sobic006G176200 Sobic007G080100 Sobic007G080100 Sobic001G380000--Sobic007G080100 Sobic001G513400--Sobic004G289900 Sobic001G513400--Sobic002G405300 Sobic006G044800 Sobic006G044800 Sobic001G513400--Sobic006G044800 Sobic001G513400--Sobic005G185750 Sobic008G168932 Sobic008G168932 Sobic001G513400--Sobic008G168932 Sobic001G513400--Sobic001G036200 Sobic001G513400--Sobic010G257800 Sobic001G513400--Sobic001G380000 Sobic004G334900 Sobic004G334900 Sobic001G513400--Sobic004G334900 Sobic007G031200 Sobic007G031200 Sobic001G538425--Sobic007G031200 Sobic003G191200 Sobic003G191200 Sobic001G538425--Sobic003G191200 Sobic007G198900 Sobic007G198900 Sobic001G538425--Sobic007G198900 Sobic007G081100 Sobic007G081100 Sobic001G538425--Sobic007G081100 Sobic007G082100 Sobic007G082100 Sobic001G538425--Sobic007G082100 Sobic005G058600 Sobic005G058600 Sobic001G538425--Sobic005G058600 Sobic002G204500 Sobic002G204500 Sobic001G538425--Sobic002G204500 Sobic004G100300 Sobic004G100300 Sobic001G538425--Sobic004G100300 Sobic003G070400 Sobic003G070400 Sobic001G538425--Sobic003G070400 Sobic003G054800--Sobic001G380000 Sobic006G018701 Sobic006G018701 Sobic003G054800--Sobic006G018701 Sobic007G161100 Sobic007G161100 Sobic003G054800--Sobic007G161100 Sobic002G406801 Sobic002G406801 Sobic003G054800--Sobic002G406801 Sobic006G066050 Sobic006G066050 Sobic003G054800--Sobic006G066050 Sobic009G021000 Sobic009G021000 Sobic003G054800--Sobic009G021000 Sobic003G054800--Sobic003G233800 Sobic004G059200 Sobic004G059200 Sobic003G054800--Sobic004G059200 Sobic009G158300 Sobic009G158300 Sobic003G054800--Sobic009G158300 Sobic003G233800--Sobic001G380000 Sobic003G233800--Sobic006G176200 Sobic007G222700 Sobic007G222700 Sobic003G233800--Sobic007G222700 Sobic007G061800 Sobic007G061800 Sobic003G233800--Sobic007G061800 Sobic009G227500 Sobic009G227500 Sobic003G233800--Sobic009G227500 Sobic004G091000 Sobic004G091000 Sobic003G233800--Sobic004G091000 Sobic006G173400 Sobic006G173400 Sobic003G233800--Sobic006G173400 Sobic006G234400 Sobic006G234400 Sobic003G233800--Sobic006G234400 Sobic010G177600 Sobic010G177600 Sobic003G233800--Sobic010G177600 Sobic004G289900--Sobic008G168932 Sobic004G289900--Sobic001G513400 Sobic004G289900--Sobic005G185750 Sobic005G068500 Sobic005G068500 Sobic004G289900--Sobic005G068500 Sobic004G289900--Sobic001G036200 Sobic008G099000 Sobic008G099000 Sobic004G289900--Sobic008G099000 Sobic004G024800 Sobic004G024800 Sobic004G289900--Sobic004G024800 Sobic004G289900--Sobic006G044800 Sobic004G289900--Sobic010G257800 Sobic001G392650 Sobic001G392650 Sobic002G330200--Sobic001G392650 Sobic002G021500 Sobic002G021500 Sobic002G330200--Sobic002G021500 Sobic002G049700 Sobic002G049700 Sobic002G330200--Sobic002G049700 Sobic007G139300 Sobic007G139300 Sobic002G330200--Sobic007G139300 Sobic002G330200--Sobic002G406801 Sobic002G330200--Sobic009G158300 Sobic002G279900 Sobic002G279900 Sobic002G330200--Sobic002G279900 Sobic004G099200 Sobic004G099200 Sobic002G330200--Sobic004G099200 Sobic001G525600 Sobic001G525600 Sobic002G330200--Sobic001G525600 Sobic005G185750--Sobic008G168932 Sobic005G185750--Sobic004G289900 Sobic005G185750--Sobic006G044800 Sobic005G185750--Sobic001G513400 Sobic005G185750--Sobic005G068500 Sobic005G185750--Sobic010G257800 Sobic008G181900 Sobic008G181900 Sobic005G185750--Sobic008G181900 Sobic005G185750--Sobic008G099000 Sobic005G185750--Sobic004G024800 Sobic010G271600 Sobic010G271600 Sobic010G257800--Sobic010G271600 Sobic010G257800--Sobic006G173400 Sobic002G128700 Sobic002G128700 Sobic010G257800--Sobic002G128700 Sobic004G187400 Sobic004G187400 Sobic010G257800--Sobic004G187400 Sobic009G098400 Sobic009G098400 Sobic010G257800--Sobic009G098400 Sobic008G102850 Sobic008G102850 Sobic010G257800--Sobic008G102850 Sobic010G190500 Sobic010G190500 Sobic010G257800--Sobic010G190500 Sobic009G253700 Sobic009G253700 Sobic010G257800--Sobic009G253700 Sobic005G214700 Sobic005G214700 Sobic010G257800--Sobic005G214700
Octagon: transcription factors


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