Gene annotation
Transcriptome id Sobic.007G135900.1
Synonym Sb07g021170
Functional annotation basic helix-loop-helix, putative, expressed
UniProt C5YL75
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF100
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G68810 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os08g33590.1 : basic helix-loop-helix, putative, expressed
MaizeGDB (Corn) Zm00025a001683 , Zm00025a031136 , Zm00025a005944 , Zm00025a052825
Brachypodium KQJ90194 , KQJ98388 , KQK22480
Barley HORVU5Hr1G066530.3 , HORVU5Hr1G066530.2 , HORVU5Hr1G066530.6 , HORVU5Hr1G066530.5 , HORVU5Hr1G066530.4 , HORVU4Hr1G061760.2 , HORVU4Hr1G061760.3 , HORVU4Hr1G061760.1 , HORVU4Hr1G061760.4 , HORVU4Hr1G061760.5
Wheat TraesCS4B02G217400 , TraesCS5A02G230500 , TraesCS5D02G237300 , TraesCS4D02G217700 , TraesCS4A02G087000 , TraesCS5B02G229000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G135900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G241000 expressed protein -
2 Sobic.004G232600 expressed protein -
3 Sobic.006G082700 expressed protein -
4 Sobic.002G059600 OsFBX237 - F-box domain containing protein, expressed -
5 Sobic.003G088900 multicopper oxidase domain containing protein, expressed -
6 Sobic.010G212000 haemolysin-III, putative, expressed K07297: adiponectin receptor
7 Sobic.001G227100 zinc finger family protein, putative, expressed -
8 Sobic.007G073900 histone-lysine N-methyltransferase ASHR2, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
9 Sobic.005G226000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@S-domain receptor-like protein kinase, putative, expressed -
10 Sobic.001G368900 IQ calmodulin-binding motif family protein, putative, expressed -
11 Sobic.005G003750 - -
12 Sobic.004G067900 expressed protein -
13 Sobic.004G085800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ICE-like protease p20 domain containing protein, putative, expressed -
14 Sobic.002G240800 - -
15 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.009G025100 transporter, putative, expressed -
17 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
18 Sobic.002G247300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor, putative, expressed K14431: transcription factor TGA
19 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
20 Sobic.008G020700 ZF-HD protein dimerisation region containing protein, expressed -


Gene co-expression network
sample Sobic007G135900 Sobic007G135900 Sobic002G241000 Sobic002G241000 Sobic007G135900--Sobic002G241000 Sobic004G232600 Sobic004G232600 Sobic007G135900--Sobic004G232600 Sobic006G082700 Sobic006G082700 Sobic007G135900--Sobic006G082700 Sobic002G059600 Sobic002G059600 Sobic007G135900--Sobic002G059600 Sobic003G088900 Sobic003G088900 Sobic007G135900--Sobic003G088900 Sobic010G212000 Sobic010G212000 Sobic007G135900--Sobic010G212000 Sobic001G227100 Sobic001G227100 Sobic007G135900--Sobic001G227100 Sobic007G073900 Sobic007G073900 Sobic007G135900--Sobic007G073900 Sobic005G226000 Sobic005G226000 Sobic007G135900--Sobic005G226000 Sobic002G241000--Sobic001G227100 Sobic004G063750 Sobic004G063750 Sobic002G241000--Sobic004G063750 Sobic002G241000--Sobic006G082700 Sobic002G241000--Sobic007G135900 Sobic002G241000--Sobic002G059600 Sobic003G438200 Sobic003G438200 Sobic002G241000--Sobic003G438200 Sobic001G298100 Sobic001G298100 Sobic002G241000--Sobic001G298100 Sobic002G295000 Sobic002G295000 Sobic002G241000--Sobic002G295000 Sobic002G241000--Sobic010G212000 Sobic009G153500 Sobic009G153500 Sobic004G232600--Sobic009G153500 Sobic003G256900 Sobic003G256900 Sobic004G232600--Sobic003G256900 Sobic005G170100 Sobic005G170100 Sobic004G232600--Sobic005G170100 Sobic010G027300 Sobic010G027300 Sobic004G232600--Sobic010G027300 Sobic003G086500 Sobic003G086500 Sobic004G232600--Sobic003G086500 Sobic003G205600 Sobic003G205600 Sobic004G232600--Sobic003G205600 Sobic008G062900 Sobic008G062900 Sobic004G232600--Sobic008G062900 Sobic003G083600 Sobic003G083600 Sobic004G232600--Sobic003G083600 Sobic001G348800 Sobic001G348800 Sobic004G232600--Sobic001G348800 Sobic006G082700--Sobic002G241000 Sobic006G082700--Sobic007G135900 Sobic002G058600 Sobic002G058600 Sobic006G082700--Sobic002G058600 Sobic006G082700--Sobic001G227100 Sobic007G142100 Sobic007G142100 Sobic006G082700--Sobic007G142100 Sobic001G513100 Sobic001G513100 Sobic006G082700--Sobic001G513100 Sobic006G082700--Sobic003G088900 Sobic002G038400 Sobic002G038400 Sobic006G082700--Sobic002G038400 Sobic007G038900 Sobic007G038900 Sobic006G082700--Sobic007G038900 Sobic003G355700 Sobic003G355700 Sobic002G059600--Sobic003G355700 Sobic002G139900 Sobic002G139900 Sobic002G059600--Sobic002G139900 Sobic002G089500 Sobic002G089500 Sobic002G059600--Sobic002G089500 Sobic005G021100 Sobic005G021100 Sobic002G059600--Sobic005G021100 Sobic004G171600 Sobic004G171600 Sobic002G059600--Sobic004G171600 Sobic001G392900 Sobic001G392900 Sobic002G059600--Sobic001G392900 Sobic002G007700 Sobic002G007700 Sobic002G059600--Sobic002G007700 Sobic005G077900 Sobic005G077900 Sobic002G059600--Sobic005G077900 Sobic001G233600 Sobic001G233600 Sobic002G059600--Sobic001G233600 Sobic003G088900--Sobic002G139900 Sobic003G088900--Sobic007G135900 Sobic002G008200 Sobic002G008200 Sobic003G088900--Sobic002G008200 Sobic005G110466 Sobic005G110466 Sobic003G088900--Sobic005G110466 Sobic003G088900--Sobic002G059600 Sobic003G088900--Sobic001G227100 Sobic003G088900--Sobic006G082700 Sobic003G088900--Sobic007G142100 Sobic009G227000 Sobic009G227000 Sobic003G088900--Sobic009G227000 Sobic003G062200 Sobic003G062200 Sobic010G212000--Sobic003G062200 Sobic004G067900 Sobic004G067900 Sobic010G212000--Sobic004G067900 Sobic006G244500 Sobic006G244500 Sobic010G212000--Sobic006G244500 Sobic009G009800 Sobic009G009800 Sobic010G212000--Sobic009G009800 Sobic003G376000 Sobic003G376000 Sobic010G212000--Sobic003G376000 Sobic010G037200 Sobic010G037200 Sobic010G212000--Sobic010G037200 Sobic006G028000 Sobic006G028000 Sobic010G212000--Sobic006G028000 Sobic010G078200 Sobic010G078200 Sobic010G212000--Sobic010G078200 Sobic009G199300 Sobic009G199300 Sobic010G212000--Sobic009G199300 Sobic001G227100--Sobic002G241000 Sobic003G342000 Sobic003G342000 Sobic001G227100--Sobic003G342000 Sobic005G085700 Sobic005G085700 Sobic001G227100--Sobic005G085700 Sobic009G010000 Sobic009G010000 Sobic001G227100--Sobic009G010000 Sobic003G392500 Sobic003G392500 Sobic001G227100--Sobic003G392500 Sobic009G071900 Sobic009G071900 Sobic001G227100--Sobic009G071900 Sobic007G001600 Sobic007G001600 Sobic001G227100--Sobic007G001600 Sobic005G199300 Sobic005G199300 Sobic001G227100--Sobic005G199300 Sobic002G370300 Sobic002G370300 Sobic001G227100--Sobic002G370300 Sobic001G312600 Sobic001G312600 Sobic007G073900--Sobic001G312600 Sobic005G021200 Sobic005G021200 Sobic007G073900--Sobic005G021200 Sobic004G168800 Sobic004G168800 Sobic007G073900--Sobic004G168800 Sobic007G073900--Sobic007G135900 Sobic002G286100 Sobic002G286100 Sobic007G073900--Sobic002G286100 Sobic009G050100 Sobic009G050100 Sobic007G073900--Sobic009G050100 Sobic007G028900 Sobic007G028900 Sobic007G073900--Sobic007G028900 Sobic006G160200 Sobic006G160200 Sobic007G073900--Sobic006G160200 Sobic006G183600 Sobic006G183600 Sobic007G073900--Sobic006G183600 Sobic002G247300 Sobic002G247300 Sobic005G226000--Sobic002G247300 Sobic005G003750 Sobic005G003750 Sobic005G226000--Sobic005G003750 Sobic001G368900 Sobic001G368900 Sobic005G226000--Sobic001G368900 Sobic001G484100 Sobic001G484100 Sobic005G226000--Sobic001G484100 Sobic009G025100 Sobic009G025100 Sobic005G226000--Sobic009G025100 Sobic005G226000--Sobic002G008200 Sobic003G430100 Sobic003G430100 Sobic005G226000--Sobic003G430100 Sobic001G518700 Sobic001G518700 Sobic005G226000--Sobic001G518700 Sobic007G091200 Sobic007G091200 Sobic005G226000--Sobic007G091200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.