Gene annotation
Transcriptome id Sobic.007G167400.2,Sobic.007G167400.1
Synonym Sb07g024030
Functional annotation gibberellin 20 oxidase 2, putative, expressed
UniProt A0A1Z5RAA0 , C5YN60
Pfam PF03171 PF14226 PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF152
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT2G36690 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os08g44590.1 : gibberellin 20 oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a030539 , Zm00025a009424 , Zm00025a033959 , Zm00025a005590
Brachypodium KQJ99390 , KQJ91631
Barley HORVU7Hr1G060070.10 , HORVU7Hr1G060070.11 , HORVU7Hr1G060070.12 , HORVU7Hr1G060070.13 , HORVU7Hr1G060070.6 , HORVU7Hr1G060070.7 , HORVU7Hr1G060070.5 , HORVU7Hr1G060070.3 , HORVU7Hr1G060070.1 , HORVU7Hr1G060070.8 , HORVU7Hr1G060070.9
Wheat TraesCS7B02G180300 , TraesCS7A02G280900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
2 Sobic.010G192366 - -
3 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
4 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
5 Sobic.005G110490 - -
6 Sobic.002G118900 auxin-induced protein 5NG4, putative, expressed -
7 Sobic.006G171300 expansin precursor, putative, expressed -
8 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.010G115000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@limonoid UDP-glucosyltransferase, putative, expressed -
10 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
11 Sobic.005G216500 plant protein of unknown function domain containing protein, expressed -
12 Sobic.005G216700 plant protein of unknown function domain containing protein, expressed -
13 Sobic.002G068000 expressed protein -
14 Sobic.010G174100 expressed protein -
15 Sobic.007G094100 OsWAK108 - OsWAK receptor-like protein kinase, expressed -
16 Sobic.006G100501 - -
17 Sobic.004G323000 SCP-like extracellular protein, expressed -
18 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.004G009300 expressed protein -
20 Sobic.002G391200 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic007G167400 Sobic007G167400 Sobic003G269900 Sobic003G269900 Sobic007G167400--Sobic003G269900 Sobic010G192366 Sobic010G192366 Sobic007G167400--Sobic010G192366 Sobic010G139100 Sobic010G139100 Sobic007G167400--Sobic010G139100 Sobic003G185300 Sobic003G185300 Sobic007G167400--Sobic003G185300 Sobic005G110490 Sobic005G110490 Sobic007G167400--Sobic005G110490 Sobic002G118900 Sobic002G118900 Sobic007G167400--Sobic002G118900 Sobic006G171300 Sobic006G171300 Sobic007G167400--Sobic006G171300 Sobic009G032900 Sobic009G032900 Sobic007G167400--Sobic009G032900 Sobic010G115000 Sobic010G115000 Sobic007G167400--Sobic010G115000 Sobic003G269900--Sobic002G118900 Sobic003G269900--Sobic010G115000 Sobic003G269900--Sobic010G139100 Sobic003G269900--Sobic009G032900 Sobic005G216500 Sobic005G216500 Sobic003G269900--Sobic005G216500 Sobic002G115600 Sobic002G115600 Sobic003G269900--Sobic002G115600 Sobic010G158400 Sobic010G158400 Sobic003G269900--Sobic010G158400 Sobic005G216700 Sobic005G216700 Sobic003G269900--Sobic005G216700 Sobic003G269900--Sobic003G185300 Sobic010G192432 Sobic010G192432 Sobic010G192366--Sobic010G192432 Sobic010G097200 Sobic010G097200 Sobic010G192366--Sobic010G097200 Sobic001G483600 Sobic001G483600 Sobic010G192366--Sobic001G483600 Sobic004G119800 Sobic004G119800 Sobic010G192366--Sobic004G119800 Sobic008G037900 Sobic008G037900 Sobic010G192366--Sobic008G037900 Sobic006G196400 Sobic006G196400 Sobic010G192366--Sobic006G196400 Sobic005G080600 Sobic005G080600 Sobic010G192366--Sobic005G080600 Sobic006G135300 Sobic006G135300 Sobic010G192366--Sobic006G135300 Sobic007G100700 Sobic007G100700 Sobic010G192366--Sobic007G100700 Sobic010G139100--Sobic009G032900 Sobic004G351200 Sobic004G351200 Sobic010G139100--Sobic004G351200 Sobic010G139100--Sobic003G269900 Sobic010G139100--Sobic005G216700 Sobic006G135500 Sobic006G135500 Sobic010G139100--Sobic006G135500 Sobic004G323000 Sobic004G323000 Sobic010G139100--Sobic004G323000 Sobic010G139100--Sobic010G115000 Sobic010G174100 Sobic010G174100 Sobic010G139100--Sobic010G174100 Sobic010G139100--Sobic010G158400 Sobic009G259800 Sobic009G259800 Sobic003G185300--Sobic009G259800 Sobic002G068000 Sobic002G068000 Sobic003G185300--Sobic002G068000 Sobic003G185300--Sobic009G032900 Sobic003G185300--Sobic010G158400 Sobic003G185300--Sobic005G080600 Sobic003G426500 Sobic003G426500 Sobic003G185300--Sobic003G426500 Sobic003G185300--Sobic005G216500 Sobic003G185300--Sobic003G269900 Sobic005G115300 Sobic005G115300 Sobic003G185300--Sobic005G115300 Sobic007G009500 Sobic007G009500 Sobic005G110490--Sobic007G009500 Sobic001G006201 Sobic001G006201 Sobic005G110490--Sobic001G006201 Sobic004G248500 Sobic004G248500 Sobic005G110490--Sobic004G248500 Sobic005G110490--Sobic005G115300 Sobic001G503000 Sobic001G503000 Sobic005G110490--Sobic001G503000 Sobic005G110490--Sobic010G192366 Sobic005G110490--Sobic007G167400 Sobic004G312200 Sobic004G312200 Sobic005G110490--Sobic004G312200 Sobic002G318200 Sobic002G318200 Sobic005G110490--Sobic002G318200 Sobic002G118900--Sobic003G269900 Sobic002G118900--Sobic002G115600 Sobic001G263300 Sobic001G263300 Sobic002G118900--Sobic001G263300 Sobic002G118900--Sobic005G216500 Sobic002G003400 Sobic002G003400 Sobic002G118900--Sobic002G003400 Sobic002G118900--Sobic006G196400 Sobic002G118900--Sobic009G032900 Sobic003G046700 Sobic003G046700 Sobic002G118900--Sobic003G046700 Sobic002G118900--Sobic005G080600 Sobic007G094100 Sobic007G094100 Sobic006G171300--Sobic007G094100 Sobic006G171300--Sobic010G174100 Sobic006G171300--Sobic010G115000 Sobic009G096300 Sobic009G096300 Sobic006G171300--Sobic009G096300 Sobic004G009300 Sobic004G009300 Sobic006G171300--Sobic004G009300 Sobic006G171300--Sobic003G269900 Sobic006G171300--Sobic010G139100 Sobic002G392300 Sobic002G392300 Sobic006G171300--Sobic002G392300 Sobic002G391200 Sobic002G391200 Sobic006G171300--Sobic002G391200 Sobic009G032900--Sobic002G068000 Sobic009G032900--Sobic004G351200 Sobic009G032900--Sobic005G216700 Sobic009G032900--Sobic010G158400 Sobic002G334000 Sobic002G334000 Sobic009G032900--Sobic002G334000 Sobic009G032900--Sobic010G139100 Sobic007G206800 Sobic007G206800 Sobic009G032900--Sobic007G206800 Sobic009G032900--Sobic003G046700 Sobic009G032900--Sobic003G269900 Sobic010G115000--Sobic007G094100 Sobic010G115000--Sobic003G269900 Sobic010G115000--Sobic005G216500 Sobic010G115000--Sobic003G046700 Sobic004G008600 Sobic004G008600 Sobic010G115000--Sobic004G008600 Sobic010G115000--Sobic006G171300 Sobic010G115000--Sobic010G139100 Sobic010G269000 Sobic010G269000 Sobic010G115000--Sobic010G269000 Sobic008G084900 Sobic008G084900 Sobic010G115000--Sobic008G084900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.