Gene annotation
Transcriptome id Sobic.007G209500.1
Synonym Sb07g027680
Functional annotation DNA-binding bromodomain-containing protein, putative, expressed
UniProt C5YIR4
Pfam PF00249 PF00439
Panther DB PTHR22881 PTHR22881:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G57980 : DNA-binding bromodomain-containing protein
RAP-DB (Rice) LOC_Os08g39980.1 : DNA-binding bromodomain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a005107
Brachypodium PNT68396 , PNT68397 , KQJ98935
Barley HORVU7Hr1G050770.8 , HORVU7Hr1G050770.2 , HORVU7Hr1G050770.3 , HORVU7Hr1G050770.1 , HORVU7Hr1G050770.6 , HORVU7Hr1G050770.7 , HORVU7Hr1G050770.4 , HORVU7Hr1G050770.5
Wheat TraesCS7D02G245800 , TraesCS7B02G144300 , TraesCS7A02G247200
Populus -


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cDNA sequences
Sobic.007G209500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G018500 - -
2 Sobic.006G165650 - -
3 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
4 Sobic.001G184900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"Expressed protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659837)@expressed protein -
5 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
6 Sobic.003G382300 no apical meristem protein, putative, expressed -
7 Sobic.009G206400 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
8 Sobic.007G157800 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Gibberellin receptor GID1L2("PubMedID : 26759170,PubMedID : 24597475")@gibberellin receptor GID1L2, putative, expressed -
9 Sobic.001G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
10 Sobic.001G418650 - -
11 Sobic.003G423100 NAM, putative, expressed -
12 Sobic.003G325300 NB-ARC/LRR disease resistance protein, putative, expressed -
13 Sobic.010G173550 - -
14 Sobic.001G362400 PPR repeat containing protein, expressed -
15 Sobic.005G008301 - -
16 Sobic.001G177200 frigida, putative, expressed -
17 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.009G070900 - -
19 Sobic.001G079600 HLS, putative, expressed -
20 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -


Gene co-expression network
sample Sobic007G209500 Sobic007G209500 Sobic004G018500 Sobic004G018500 Sobic007G209500--Sobic004G018500 Sobic006G165650 Sobic006G165650 Sobic007G209500--Sobic006G165650 Sobic001G134600 Sobic001G134600 Sobic007G209500--Sobic001G134600 Sobic001G184900 Sobic001G184900 Sobic007G209500--Sobic001G184900 Sobic001G419900 Sobic001G419900 Sobic007G209500--Sobic001G419900 Sobic003G382300 Sobic003G382300 Sobic007G209500--Sobic003G382300 Sobic009G206400 Sobic009G206400 Sobic007G209500--Sobic009G206400 Sobic007G157800 Sobic007G157800 Sobic007G209500--Sobic007G157800 Sobic001G256900 Sobic001G256900 Sobic007G209500--Sobic001G256900 Sobic010G060000 Sobic010G060000 Sobic004G018500--Sobic010G060000 Sobic010G153532 Sobic010G153532 Sobic004G018500--Sobic010G153532 Sobic004G018500--Sobic009G206400 Sobic004G018500--Sobic007G209500 Sobic004G018500--Sobic006G165650 Sobic004G018500--Sobic003G382300 Sobic005G194200 Sobic005G194200 Sobic004G018500--Sobic005G194200 Sobic001G063900 Sobic001G063900 Sobic004G018500--Sobic001G063900 Sobic008G086401 Sobic008G086401 Sobic004G018500--Sobic008G086401 Sobic006G165650--Sobic007G157800 Sobic002G040500 Sobic002G040500 Sobic006G165650--Sobic002G040500 Sobic006G165650--Sobic009G206400 Sobic007G207300 Sobic007G207300 Sobic006G165650--Sobic007G207300 Sobic008G175700 Sobic008G175700 Sobic006G165650--Sobic008G175700 Sobic002G175550 Sobic002G175550 Sobic006G165650--Sobic002G175550 Sobic001G177200 Sobic001G177200 Sobic006G165650--Sobic001G177200 Sobic005G097700 Sobic005G097700 Sobic006G165650--Sobic005G097700 Sobic006G165650--Sobic001G256900 Sobic001G378550 Sobic001G378550 Sobic001G134600--Sobic001G378550 Sobic002G052500 Sobic002G052500 Sobic001G134600--Sobic002G052500 Sobic001G134600--Sobic001G419900 Sobic001G049000 Sobic001G049000 Sobic001G134600--Sobic001G049000 Sobic004G356600 Sobic004G356600 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic006G090201 Sobic006G090201 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G134600--Sobic001G063900 Sobic001G178200 Sobic001G178200 Sobic001G184900--Sobic001G178200 Sobic010G004001 Sobic010G004001 Sobic001G184900--Sobic010G004001 Sobic002G410050 Sobic002G410050 Sobic001G184900--Sobic002G410050 Sobic005G037500 Sobic005G037500 Sobic001G184900--Sobic005G037500 Sobic001G184900--Sobic002G052500 Sobic006G136900 Sobic006G136900 Sobic001G184900--Sobic006G136900 Sobic010G173550 Sobic010G173550 Sobic001G184900--Sobic010G173550 Sobic004G330500 Sobic004G330500 Sobic001G184900--Sobic004G330500 Sobic006G185400 Sobic006G185400 Sobic001G184900--Sobic006G185400 Sobic001G419900--Sobic001G134600 Sobic002G034400 Sobic002G034400 Sobic001G419900--Sobic002G034400 Sobic001G419900--Sobic005G097700 Sobic001G419900--Sobic002G052500 Sobic001G419900--Sobic004G356600 Sobic001G419900--Sobic001G378550 Sobic001G419900--Sobic006G090201 Sobic009G070900 Sobic009G070900 Sobic001G419900--Sobic009G070900 Sobic001G419900--Sobic002G175550 Sobic003G382300--Sobic009G206400 Sobic002G314200 Sobic002G314200 Sobic003G382300--Sobic002G314200 Sobic003G382300--Sobic004G018500 Sobic006G074100 Sobic006G074100 Sobic003G382300--Sobic006G074100 Sobic002G256000 Sobic002G256000 Sobic003G382300--Sobic002G256000 Sobic001G077100 Sobic001G077100 Sobic003G382300--Sobic001G077100 Sobic009G034600 Sobic009G034600 Sobic003G382300--Sobic009G034600 Sobic003G421400 Sobic003G421400 Sobic003G382300--Sobic003G421400 Sobic004G186200 Sobic004G186200 Sobic003G382300--Sobic004G186200 Sobic009G206400--Sobic002G040500 Sobic009G206400--Sobic006G165650 Sobic009G206400--Sobic010G060000 Sobic009G206400--Sobic006G074100 Sobic003G437600 Sobic003G437600 Sobic009G206400--Sobic003G437600 Sobic003G325300 Sobic003G325300 Sobic009G206400--Sobic003G325300 Sobic004G187100 Sobic004G187100 Sobic009G206400--Sobic004G187100 Sobic009G206400--Sobic003G382300 Sobic009G206400--Sobic001G077100 Sobic007G157800--Sobic006G165650 Sobic007G157800--Sobic007G207300 Sobic007G070600 Sobic007G070600 Sobic007G157800--Sobic007G070600 Sobic007G157800--Sobic001G256900 Sobic007G157800--Sobic005G097700 Sobic007G157800--Sobic002G175550 Sobic007G157800--Sobic001G177200 Sobic007G157800--Sobic002G040500 Sobic003G336400 Sobic003G336400 Sobic007G157800--Sobic003G336400 Sobic001G256900--Sobic004G356600 Sobic007G210400 Sobic007G210400 Sobic001G256900--Sobic007G210400 Sobic003G423100 Sobic003G423100 Sobic001G256900--Sobic003G423100 Sobic001G256900--Sobic005G097700 Sobic001G256900--Sobic003G343100 Sobic001G256900--Sobic006G090201 Sobic001G256900--Sobic001G378550 Sobic010G231400 Sobic010G231400 Sobic001G256900--Sobic010G231400 Sobic001G256900--Sobic001G049000
Octagon: transcription factors


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