Gene annotation
Transcriptome id Sobic.008G050500.1
Synonym Sb08g004250, MYB98, AtMYB98
Functional annotation MYB family transcription factor, putative, expressed
UniProt A0A1Z5R4U6
Pfam PF13921
Panther DB PTHR10641 PTHR10641:SF486
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G18770 : myb domain protein 98
RAP-DB (Rice) LOC_Os06g06740.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a008582
Brachypodium PNT76469
Barley HORVU7Hr1G025720.1
Wheat TraesCS7B02G020700 , TraesCS7A02G121900 , TraesCS7D02G120400 , TraesCS7D02G120400 , TraesCS1D02G379200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G065500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.009G164600 ZOS1-14 - C2H2 zinc finger protein, expressed -
3 Sobic.001G325000 expressed protein -
4 Sobic.001G481500 - -
5 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
6 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
7 Sobic.007G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS8-14 - C2H2 zinc finger protein, expressed -
8 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
9 Sobic.004G166200 expressed protein -
10 Sobic.001G481600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.009G229000 expressed protein -
12 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
13 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
14 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
15 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
16 Sobic.001G430600 cytochrome P450, putative, expressed -
17 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
19 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
20 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic008G050500 Sobic008G050500 Sobic009G065500 Sobic009G065500 Sobic008G050500--Sobic009G065500 Sobic009G164600 Sobic009G164600 Sobic008G050500--Sobic009G164600 Sobic001G325000 Sobic001G325000 Sobic008G050500--Sobic001G325000 Sobic001G481500 Sobic001G481500 Sobic008G050500--Sobic001G481500 Sobic010G032100 Sobic010G032100 Sobic008G050500--Sobic010G032100 Sobic001G397200 Sobic001G397200 Sobic008G050500--Sobic001G397200 Sobic007G166000 Sobic007G166000 Sobic008G050500--Sobic007G166000 Sobic004G336500 Sobic004G336500 Sobic008G050500--Sobic004G336500 Sobic004G166200 Sobic004G166200 Sobic008G050500--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic009G065500--Sobic003G382800 Sobic003G086600 Sobic003G086600 Sobic009G065500--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic009G065500--Sobic003G367200 Sobic001G405500 Sobic001G405500 Sobic009G065500--Sobic001G405500 Sobic009G065500--Sobic004G166200 Sobic004G141200 Sobic004G141200 Sobic009G065500--Sobic004G141200 Sobic009G065500--Sobic004G336500 Sobic009G065500--Sobic009G164600 Sobic005G099000 Sobic005G099000 Sobic009G065500--Sobic005G099000 Sobic003G345100 Sobic003G345100 Sobic009G164600--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic009G164600--Sobic008G050600 Sobic005G051200 Sobic005G051200 Sobic009G164600--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic009G164600--Sobic004G208700 Sobic003G286600 Sobic003G286600 Sobic009G164600--Sobic003G286600 Sobic005G063100 Sobic005G063100 Sobic009G164600--Sobic005G063100 Sobic001G140900 Sobic001G140900 Sobic009G164600--Sobic001G140900 Sobic009G234100 Sobic009G234100 Sobic009G164600--Sobic009G234100 Sobic001G435000 Sobic001G435000 Sobic009G164600--Sobic001G435000 Sobic003G240600 Sobic003G240600 Sobic001G325000--Sobic003G240600 Sobic001G325000--Sobic009G164600 Sobic001G317200 Sobic001G317200 Sobic001G325000--Sobic001G317200 Sobic001G325000--Sobic005G051200 Sobic007G057000 Sobic007G057000 Sobic001G325000--Sobic007G057000 Sobic004G216600 Sobic004G216600 Sobic001G325000--Sobic004G216600 Sobic009G183400 Sobic009G183400 Sobic001G325000--Sobic009G183400 Sobic002G414600 Sobic002G414600 Sobic001G325000--Sobic002G414600 Sobic001G325000--Sobic008G050600 Sobic001G309600 Sobic001G309600 Sobic001G481500--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic001G481500--Sobic006G032700 Sobic001G481500--Sobic001G397200 Sobic001G481500--Sobic010G032100 Sobic001G149800 Sobic001G149800 Sobic001G481500--Sobic001G149800 Sobic003G138300 Sobic003G138300 Sobic001G481500--Sobic003G138300 Sobic001G481500--Sobic003G086600 Sobic002G215300 Sobic002G215300 Sobic001G481500--Sobic002G215300 Sobic002G068600 Sobic002G068600 Sobic001G481500--Sobic002G068600 Sobic010G032100--Sobic001G397200 Sobic010G032100--Sobic002G068600 Sobic010G031100 Sobic010G031100 Sobic010G032100--Sobic010G031100 Sobic002G261200 Sobic002G261200 Sobic010G032100--Sobic002G261200 Sobic010G032100--Sobic001G149800 Sobic010G032100--Sobic001G309600 Sobic010G032100--Sobic006G032700 Sobic003G394400 Sobic003G394400 Sobic010G032100--Sobic003G394400 Sobic010G032100--Sobic001G481500 Sobic001G397200--Sobic010G032100 Sobic001G397200--Sobic001G309600 Sobic001G397200--Sobic006G032700 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic008G070350 Sobic008G070350 Sobic001G397200--Sobic008G070350 Sobic001G397200--Sobic002G068600 Sobic001G397200--Sobic003G367200 Sobic007G026600 Sobic007G026600 Sobic001G397200--Sobic007G026600 Sobic001G449600 Sobic001G449600 Sobic007G166000--Sobic001G449600 Sobic007G166000--Sobic009G164600 Sobic005G005600 Sobic005G005600 Sobic007G166000--Sobic005G005600 Sobic009G139700 Sobic009G139700 Sobic007G166000--Sobic009G139700 Sobic010G259600 Sobic010G259600 Sobic007G166000--Sobic010G259600 Sobic006G143400 Sobic006G143400 Sobic007G166000--Sobic006G143400 Sobic009G217700 Sobic009G217700 Sobic007G166000--Sobic009G217700 Sobic009G231000 Sobic009G231000 Sobic007G166000--Sobic009G231000 Sobic007G005700 Sobic007G005700 Sobic007G166000--Sobic007G005700 Sobic009G069800 Sobic009G069800 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic007G008100 Sobic007G008100 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G336500--Sobic010G225251 Sobic004G336500--Sobic003G382800 Sobic001G280800 Sobic001G280800 Sobic004G336500--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic004G336500--Sobic001G138600 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic003G148600 Sobic003G148600 Sobic004G166200--Sobic003G148600 Sobic001G371800 Sobic001G371800 Sobic004G166200--Sobic001G371800 Sobic007G214600 Sobic007G214600 Sobic004G166200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic004G166200--Sobic001G107800 Sobic003G355100 Sobic003G355100 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic003G197200 Sobic003G197200 Sobic004G166200--Sobic003G197200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.