Gene annotation
Transcriptome id Sobic.008G058100.6,Sobic.008G058100.5
Synonym SRT2, Sb08g004900, AtSRT2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transcriptional regulator Sir2 family protein, putative, expressed
UniProt A0A1Z5R5J9 , A0A1B6PBP5
Pfam PF02146
Panther DB PTHR11085 PTHR11085:SF6
NCBI CDD KOG2683; Sirtuin 4 and related class II sirtuins (SIR2 family)
KEGG Orthology K11414; SIRT4, NAD+-dependent protein deacetylase sirtuin 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09230 : sirtuin 2
RAP-DB (Rice) LOC_Os12g07950.1 : transcriptional regulator Sir2 family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT65353
Barley HORVU5Hr1G037540.12 , HORVU5Hr1G037540.13 , HORVU5Hr1G037540.10 , HORVU5Hr1G037540.11 , HORVU5Hr1G037540.1 , HORVU5Hr1G037540.2 , HORVU5Hr1G037540.3 , HORVU5Hr1G037540.4 , HORVU5Hr1G037540.5 , HORVU5Hr1G037540.6 , HORVU5Hr1G037540.7 , HORVU5Hr1G037540.8 , HORVU5Hr1G037540.9
Wheat TraesCSU02G136000 , TraesCS5A02G114700 , TraesCS5A02G114700 , TraesCS5D02G124700 , TraesCS5D02G124700 , TraesCS5A02G114700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G155300 solute carrier family 35 member F2, putative, expressed K15287: solute carrier family 35, member F1/2
2 Sobic.009G176800 DUF567 domain containing protein, putative, expressed -
3 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
4 Sobic.002G230600 glucose-6-phosphate isomerase, putative, expressed K01810: GPI, glucose-6-phosphate isomerase
5 Sobic.004G113100 "OsSPMS1(Ortholog in rice:Tao et al., 2018)"(PubMedID : 31659881)@spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
6 Sobic.008G002400 expressed protein -
7 Sobic.004G097200 Mpv17 / PMP22 family domain containing protein, expressed K13347: PXMP2, peroxisomal membrane protein 2
8 Sobic.010G007500 adenylate kinase, putative, expressed K13800: CMPK1, UMP-CMP kinase
9 Sobic.006G271500 phosphomannomutase, putative, expressed K17497: phosphomannomutase
10 Sobic.010G165200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.004G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
12 Sobic.008G091557 - -
13 Sobic.006G150800 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
14 Sobic.004G283700 OsFBX58 - F-box domain containing protein, expressed -
15 Sobic.005G002400 expressed protein -
16 Sobic.005G133900 TPR repeat region family protein, expressed -
17 Sobic.002G133800 monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
18 Sobic.003G014400 expressed protein -
19 Sobic.001G469700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase
20 Sobic.003G112900 expressed protein -


Gene co-expression network
sample Sobic008G058100 Sobic008G058100 Sobic009G155300 Sobic009G155300 Sobic008G058100--Sobic009G155300 Sobic009G176800 Sobic009G176800 Sobic008G058100--Sobic009G176800 Sobic010G083500 Sobic010G083500 Sobic008G058100--Sobic010G083500 Sobic002G230600 Sobic002G230600 Sobic008G058100--Sobic002G230600 Sobic004G113100 Sobic004G113100 Sobic008G058100--Sobic004G113100 Sobic008G002400 Sobic008G002400 Sobic008G058100--Sobic008G002400 Sobic004G097200 Sobic004G097200 Sobic008G058100--Sobic004G097200 Sobic010G007500 Sobic010G007500 Sobic008G058100--Sobic010G007500 Sobic006G271500 Sobic006G271500 Sobic008G058100--Sobic006G271500 Sobic009G155300--Sobic006G271500 Sobic002G128900 Sobic002G128900 Sobic009G155300--Sobic002G128900 Sobic009G207300 Sobic009G207300 Sobic009G155300--Sobic009G207300 Sobic009G155300--Sobic004G113100 Sobic010G049100 Sobic010G049100 Sobic009G155300--Sobic010G049100 Sobic004G121300 Sobic004G121300 Sobic009G155300--Sobic004G121300 Sobic009G155300--Sobic002G230600 Sobic001G048200 Sobic001G048200 Sobic009G155300--Sobic001G048200 Sobic002G279700 Sobic002G279700 Sobic009G155300--Sobic002G279700 Sobic004G059600 Sobic004G059600 Sobic009G176800--Sobic004G059600 Sobic003G134600 Sobic003G134600 Sobic009G176800--Sobic003G134600 Sobic005G115600 Sobic005G115600 Sobic009G176800--Sobic005G115600 Sobic004G323900 Sobic004G323900 Sobic009G176800--Sobic004G323900 Sobic004G106300 Sobic004G106300 Sobic009G176800--Sobic004G106300 Sobic009G176800--Sobic006G271500 Sobic004G238100 Sobic004G238100 Sobic009G176800--Sobic004G238100 Sobic009G003000 Sobic009G003000 Sobic009G176800--Sobic009G003000 Sobic001G142800 Sobic001G142800 Sobic009G176800--Sobic001G142800 Sobic010G165500 Sobic010G165500 Sobic010G083500--Sobic010G165500 Sobic006G123300 Sobic006G123300 Sobic010G083500--Sobic006G123300 Sobic010G050800 Sobic010G050800 Sobic010G083500--Sobic010G050800 Sobic010G232100 Sobic010G232100 Sobic010G083500--Sobic010G232100 Sobic007G088000 Sobic007G088000 Sobic010G083500--Sobic007G088000 Sobic010G277800 Sobic010G277800 Sobic010G083500--Sobic010G277800 Sobic004G272700 Sobic004G272700 Sobic010G083500--Sobic004G272700 Sobic009G185800 Sobic009G185800 Sobic010G083500--Sobic009G185800 Sobic001G357300 Sobic001G357300 Sobic010G083500--Sobic001G357300 Sobic010G062500 Sobic010G062500 Sobic002G230600--Sobic010G062500 Sobic002G230600--Sobic004G113100 Sobic008G037800 Sobic008G037800 Sobic002G230600--Sobic008G037800 Sobic001G167900 Sobic001G167900 Sobic002G230600--Sobic001G167900 Sobic004G124400 Sobic004G124400 Sobic002G230600--Sobic004G124400 Sobic004G154800 Sobic004G154800 Sobic002G230600--Sobic004G154800 Sobic006G265900 Sobic006G265900 Sobic002G230600--Sobic006G265900 Sobic002G351600 Sobic002G351600 Sobic002G230600--Sobic002G351600 Sobic004G305900 Sobic004G305900 Sobic002G230600--Sobic004G305900 Sobic003G103300 Sobic003G103300 Sobic004G113100--Sobic003G103300 Sobic004G125800 Sobic004G125800 Sobic004G113100--Sobic004G125800 Sobic001G015200 Sobic001G015200 Sobic004G113100--Sobic001G015200 Sobic007G046950 Sobic007G046950 Sobic004G113100--Sobic007G046950 Sobic010G101000 Sobic010G101000 Sobic004G113100--Sobic010G101000 Sobic009G225600 Sobic009G225600 Sobic004G113100--Sobic009G225600 Sobic005G062700 Sobic005G062700 Sobic004G113100--Sobic005G062700 Sobic002G030900 Sobic002G030900 Sobic004G113100--Sobic002G030900 Sobic001G104700 Sobic001G104700 Sobic004G113100--Sobic001G104700 Sobic005G002400 Sobic005G002400 Sobic008G002400--Sobic005G002400 Sobic003G326000 Sobic003G326000 Sobic008G002400--Sobic003G326000 Sobic001G181100 Sobic001G181100 Sobic008G002400--Sobic001G181100 Sobic010G271800 Sobic010G271800 Sobic008G002400--Sobic010G271800 Sobic006G020300 Sobic006G020300 Sobic008G002400--Sobic006G020300 Sobic001G112900 Sobic001G112900 Sobic008G002400--Sobic001G112900 Sobic007G016600 Sobic007G016600 Sobic008G002400--Sobic007G016600 Sobic004G190100 Sobic004G190100 Sobic008G002400--Sobic004G190100 Sobic010G113200 Sobic010G113200 Sobic008G002400--Sobic010G113200 Sobic004G324100 Sobic004G324100 Sobic004G097200--Sobic004G324100 Sobic004G097200--Sobic002G279700 Sobic002G280100 Sobic002G280100 Sobic004G097200--Sobic002G280100 Sobic005G004500 Sobic005G004500 Sobic004G097200--Sobic005G004500 Sobic004G097200--Sobic010G062500 Sobic003G373600 Sobic003G373600 Sobic004G097200--Sobic003G373600 Sobic001G309900 Sobic001G309900 Sobic004G097200--Sobic001G309900 Sobic004G097200--Sobic004G305900 Sobic001G352200 Sobic001G352200 Sobic004G097200--Sobic001G352200 Sobic010G007500--Sobic004G113100 Sobic010G007500--Sobic005G004500 Sobic010G007500--Sobic001G167900 Sobic010G007500--Sobic004G125800 Sobic009G241100 Sobic009G241100 Sobic010G007500--Sobic009G241100 Sobic010G007500--Sobic004G154800 Sobic002G072400 Sobic002G072400 Sobic010G007500--Sobic002G072400 Sobic010G007500--Sobic002G230600 Sobic002G200900 Sobic002G200900 Sobic010G007500--Sobic002G200900 Sobic006G271500--Sobic002G230600 Sobic006G271500--Sobic002G128900 Sobic006G271500--Sobic004G238100 Sobic006G271500--Sobic009G155300 Sobic006G271500--Sobic004G121300 Sobic001G261545 Sobic001G261545 Sobic006G271500--Sobic001G261545 Sobic006G271500--Sobic010G050800 Sobic001G085600 Sobic001G085600 Sobic006G271500--Sobic001G085600 Sobic006G271500--Sobic008G037800
Octagon: transcription factors


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