Gene annotation
Transcriptome id Sobic.003G014400.1
Synonym Sb03g001430
Functional annotation expressed protein
UniProt C5XKD5
Pfam -
Panther DB PTHR33513 PTHR33513:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41761 : -
RAP-DB (Rice) LOC_Os01g12190.1 : expressed protein
MaizeGDB (Corn) Zm00025a035944
Brachypodium KQK03342
Barley HORVU3Hr1G029750.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G106300 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
2 Sobic.001G353200 ctr copper transporter family protein, putative, expressed K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1
3 Sobic.001G142800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
4 Sobic.001G243100 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
5 Sobic.003G134600 expressed protein -
6 Sobic.006G117600 Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed K01188: beta-glucosidase
7 Sobic.002G041100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine aminotransferase, putative, expressed K00815: tyrosine aminotransferase
8 Sobic.006G271500 phosphomannomutase, putative, expressed K17497: phosphomannomutase
9 Sobic.004G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
10 Sobic.001G243150 - -
11 Sobic.006G259700 methylthioribose kinase, putative, expressed K00899: 5-methylthioribose kinase
12 Sobic.010G083500 pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed K17872: NDC1, demethylphylloquinone reductase
13 Sobic.009G176800 DUF567 domain containing protein, putative, expressed -
14 Sobic.004G201100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@The B-phenyl ring of naringenin can be hydroxylated at the 3' positions to produce eriodictyol(PubMedID : 16943219)@cytochrome P450, putative, expressed K05280: flavonoid 3'-monooxygenase
15 Sobic.008G058100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcriptional regulator Sir2 family protein, putative, expressed K11414: SIRT4, NAD+-dependent protein deacetylase sirtuin 4
16 Sobic.003G099000 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.007G193200 MTA/SAH nucleosidase, putative, expressed K01244: 5'-methylthioadenosine nucleosidase
18 Sobic.009G067450 - -
19 Sobic.003G199900 aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
20 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic003G014400 Sobic003G014400 Sobic004G106300 Sobic004G106300 Sobic003G014400--Sobic004G106300 Sobic001G353200 Sobic001G353200 Sobic003G014400--Sobic001G353200 Sobic001G142800 Sobic001G142800 Sobic003G014400--Sobic001G142800 Sobic001G243100 Sobic001G243100 Sobic003G014400--Sobic001G243100 Sobic003G134600 Sobic003G134600 Sobic003G014400--Sobic003G134600 Sobic006G117600 Sobic006G117600 Sobic003G014400--Sobic006G117600 Sobic002G041100 Sobic002G041100 Sobic003G014400--Sobic002G041100 Sobic006G271500 Sobic006G271500 Sobic003G014400--Sobic006G271500 Sobic004G238100 Sobic004G238100 Sobic003G014400--Sobic004G238100 Sobic004G312200 Sobic004G312200 Sobic004G106300--Sobic004G312200 Sobic010G082000 Sobic010G082000 Sobic004G106300--Sobic010G082000 Sobic003G203600 Sobic003G203600 Sobic004G106300--Sobic003G203600 Sobic003G240400 Sobic003G240400 Sobic004G106300--Sobic003G240400 Sobic003G128800 Sobic003G128800 Sobic004G106300--Sobic003G128800 Sobic006G196400 Sobic006G196400 Sobic004G106300--Sobic006G196400 Sobic002G195600 Sobic002G195600 Sobic004G106300--Sobic002G195600 Sobic006G092700 Sobic006G092700 Sobic004G106300--Sobic006G092700 Sobic003G426500 Sobic003G426500 Sobic004G106300--Sobic003G426500 Sobic007G193200 Sobic007G193200 Sobic001G353200--Sobic007G193200 Sobic001G243150 Sobic001G243150 Sobic001G353200--Sobic001G243150 Sobic005G046400 Sobic005G046400 Sobic001G353200--Sobic005G046400 Sobic009G065700 Sobic009G065700 Sobic001G353200--Sobic009G065700 Sobic002G111900 Sobic002G111900 Sobic001G353200--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic001G353200--Sobic010G191600 Sobic009G225800 Sobic009G225800 Sobic001G353200--Sobic009G225800 Sobic003G441800 Sobic003G441800 Sobic001G353200--Sobic003G441800 Sobic002G289500 Sobic002G289500 Sobic001G353200--Sobic002G289500 Sobic002G041200 Sobic002G041200 Sobic001G142800--Sobic002G041200 Sobic001G142800--Sobic004G238100 Sobic009G003000 Sobic009G003000 Sobic001G142800--Sobic009G003000 Sobic001G142800--Sobic002G041100 Sobic006G259700 Sobic006G259700 Sobic001G142800--Sobic006G259700 Sobic001G142800--Sobic003G134600 Sobic009G176800 Sobic009G176800 Sobic001G142800--Sobic009G176800 Sobic006G024600 Sobic006G024600 Sobic001G142800--Sobic006G024600 Sobic010G225701 Sobic010G225701 Sobic001G142800--Sobic010G225701 Sobic005G110541 Sobic005G110541 Sobic001G243100--Sobic005G110541 Sobic001G243100--Sobic007G193200 Sobic005G100800 Sobic005G100800 Sobic001G243100--Sobic005G100800 Sobic001G243100--Sobic001G353200 Sobic001G243100--Sobic002G041100 Sobic002G194600 Sobic002G194600 Sobic001G243100--Sobic002G194600 Sobic005G115600 Sobic005G115600 Sobic001G243100--Sobic005G115600 Sobic001G443100 Sobic001G443100 Sobic001G243100--Sobic001G443100 Sobic006G030800 Sobic006G030800 Sobic001G243100--Sobic006G030800 Sobic003G134600--Sobic006G117600 Sobic010G115000 Sobic010G115000 Sobic003G134600--Sobic010G115000 Sobic007G094100 Sobic007G094100 Sobic003G134600--Sobic007G094100 Sobic005G216500 Sobic005G216500 Sobic003G134600--Sobic005G216500 Sobic004G008600 Sobic004G008600 Sobic003G134600--Sobic004G008600 Sobic010G269000 Sobic010G269000 Sobic003G134600--Sobic010G269000 Sobic003G046700 Sobic003G046700 Sobic003G134600--Sobic003G046700 Sobic005G079100 Sobic005G079100 Sobic003G134600--Sobic005G079100 Sobic004G009300 Sobic004G009300 Sobic003G134600--Sobic004G009300 Sobic006G009700 Sobic006G009700 Sobic006G117600--Sobic006G009700 Sobic008G084900 Sobic008G084900 Sobic006G117600--Sobic008G084900 Sobic006G117600--Sobic004G008600 Sobic006G117600--Sobic005G216500 Sobic002G238700 Sobic002G238700 Sobic006G117600--Sobic002G238700 Sobic006G117600--Sobic010G269000 Sobic002G019100 Sobic002G019100 Sobic006G117600--Sobic002G019100 Sobic004G126500 Sobic004G126500 Sobic006G117600--Sobic004G126500 Sobic005G134200 Sobic005G134200 Sobic006G117600--Sobic005G134200 Sobic002G041100--Sobic001G443100 Sobic006G230100 Sobic006G230100 Sobic002G041100--Sobic006G230100 Sobic002G082000 Sobic002G082000 Sobic002G041100--Sobic002G082000 Sobic001G395900 Sobic001G395900 Sobic002G041100--Sobic001G395900 Sobic004G299500 Sobic004G299500 Sobic002G041100--Sobic004G299500 Sobic005G097900 Sobic005G097900 Sobic002G041100--Sobic005G097900 Sobic002G041100--Sobic007G193200 Sobic007G015000 Sobic007G015000 Sobic002G041100--Sobic007G015000 Sobic002G041100--Sobic001G353200 Sobic002G230600 Sobic002G230600 Sobic006G271500--Sobic002G230600 Sobic002G128900 Sobic002G128900 Sobic006G271500--Sobic002G128900 Sobic006G271500--Sobic004G238100 Sobic009G155300 Sobic009G155300 Sobic006G271500--Sobic009G155300 Sobic004G121300 Sobic004G121300 Sobic006G271500--Sobic004G121300 Sobic001G261545 Sobic001G261545 Sobic006G271500--Sobic001G261545 Sobic010G050800 Sobic010G050800 Sobic006G271500--Sobic010G050800 Sobic001G085600 Sobic001G085600 Sobic006G271500--Sobic001G085600 Sobic008G037800 Sobic008G037800 Sobic006G271500--Sobic008G037800 Sobic004G238100--Sobic001G142800 Sobic005G091300 Sobic005G091300 Sobic004G238100--Sobic005G091300 Sobic004G238100--Sobic009G003000 Sobic004G238100--Sobic006G271500 Sobic008G119800 Sobic008G119800 Sobic004G238100--Sobic008G119800 Sobic009G246300 Sobic009G246300 Sobic004G238100--Sobic009G246300 Sobic004G238100--Sobic006G259700 Sobic004G113100 Sobic004G113100 Sobic004G238100--Sobic004G113100 Sobic004G238100--Sobic009G176800
Octagon: transcription factors


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