Gene annotation
Transcriptome id Sobic.008G078550.1
Synonym -
Functional annotation -
UniProt A0A1Z5R675
Pfam PF00098
Panther DB PTHR23002 PTHR23002:SF63
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G43590 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os04g45890.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G073800 OsFBX411 - F-box domain containing protein, expressed -
2 Sobic.003G080300 expressed protein -
3 Sobic.001G009000 expressed protein -
4 Sobic.002G077400 receptor-like protein kinase precursor, putative, expressed -
5 Sobic.010G178401 - -
6 Sobic.004G223400 OsWAK14 - OsWAK receptor-like protein kinase, expressed -
7 Sobic.005G211600 zinc knuckle family protein, expressed -
8 Sobic.005G221900 - -
9 Sobic.008G166550 - -
10 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
11 Sobic.010G153201 - -
12 Sobic.005G208200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
13 Sobic.002G244200 nucleolar GTP-binding protein 1, putative, expressed -
14 Sobic.010G271901 - -
15 Sobic.007G133000 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
16 Sobic.007G061100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor, putative, expressed K14431: transcription factor TGA
17 Sobic.003G295300 -(PubMedID : 21930910)@-(PubMedID : 24884377)@osFTL9 FT-Like9 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein K16223: protein FLOWERING LOCUS T
18 Sobic.002G097700 expressed protein -
19 Sobic.002G324400 PPDK-RP(PubMedID : 19549309)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
20 Sobic.001G419600 DnaK family protein, putative, expressed -


Gene co-expression network
sample Sobic008G078550 Sobic008G078550 Sobic005G073800 Sobic005G073800 Sobic008G078550--Sobic005G073800 Sobic003G080300 Sobic003G080300 Sobic008G078550--Sobic003G080300 Sobic001G009000 Sobic001G009000 Sobic008G078550--Sobic001G009000 Sobic002G077400 Sobic002G077400 Sobic008G078550--Sobic002G077400 Sobic010G178401 Sobic010G178401 Sobic008G078550--Sobic010G178401 Sobic004G223400 Sobic004G223400 Sobic008G078550--Sobic004G223400 Sobic005G211600 Sobic005G211600 Sobic008G078550--Sobic005G211600 Sobic005G221900 Sobic005G221900 Sobic008G078550--Sobic005G221900 Sobic008G166550 Sobic008G166550 Sobic008G078550--Sobic008G166550 Sobic005G208200 Sobic005G208200 Sobic005G073800--Sobic005G208200 Sobic005G073800--Sobic003G080300 Sobic009G180550 Sobic009G180550 Sobic005G073800--Sobic009G180550 Sobic008G012100 Sobic008G012100 Sobic005G073800--Sobic008G012100 Sobic005G073800--Sobic004G223400 Sobic010G208750 Sobic010G208750 Sobic005G073800--Sobic010G208750 Sobic008G012150 Sobic008G012150 Sobic005G073800--Sobic008G012150 Sobic002G021900 Sobic002G021900 Sobic005G073800--Sobic002G021900 Sobic005G167000 Sobic005G167000 Sobic005G073800--Sobic005G167000 Sobic004G344600 Sobic004G344600 Sobic003G080300--Sobic004G344600 Sobic009G246400 Sobic009G246400 Sobic003G080300--Sobic009G246400 Sobic003G080300--Sobic010G178401 Sobic003G080300--Sobic005G208200 Sobic009G259100 Sobic009G259100 Sobic003G080300--Sobic009G259100 Sobic002G161400 Sobic002G161400 Sobic003G080300--Sobic002G161400 Sobic001G112900 Sobic001G112900 Sobic003G080300--Sobic001G112900 Sobic003G080300--Sobic004G223400 Sobic003G340300 Sobic003G340300 Sobic003G080300--Sobic003G340300 Sobic001G009000--Sobic002G077400 Sobic007G133000 Sobic007G133000 Sobic001G009000--Sobic007G133000 Sobic003G190100 Sobic003G190100 Sobic001G009000--Sobic003G190100 Sobic007G149700 Sobic007G149700 Sobic001G009000--Sobic007G149700 Sobic002G244200 Sobic002G244200 Sobic001G009000--Sobic002G244200 Sobic009G248801 Sobic009G248801 Sobic001G009000--Sobic009G248801 Sobic007G202300 Sobic007G202300 Sobic001G009000--Sobic007G202300 Sobic008G157100 Sobic008G157100 Sobic001G009000--Sobic008G157100 Sobic004G086150 Sobic004G086150 Sobic001G009000--Sobic004G086150 Sobic006G177900 Sobic006G177900 Sobic002G077400--Sobic006G177900 Sobic002G077400--Sobic001G009000 Sobic002G077400--Sobic003G190100 Sobic005G093800 Sobic005G093800 Sobic002G077400--Sobic005G093800 Sobic002G077400--Sobic007G149700 Sobic010G271901 Sobic010G271901 Sobic002G077400--Sobic010G271901 Sobic002G173100 Sobic002G173100 Sobic002G077400--Sobic002G173100 Sobic001G250000 Sobic001G250000 Sobic002G077400--Sobic001G250000 Sobic002G077400--Sobic010G178401 Sobic010G178401--Sobic003G080300 Sobic010G178000 Sobic010G178000 Sobic010G178401--Sobic010G178000 Sobic010G178401--Sobic005G211600 Sobic010G100900 Sobic010G100900 Sobic010G178401--Sobic010G100900 Sobic007G016600 Sobic007G016600 Sobic010G178401--Sobic007G016600 Sobic010G207100 Sobic010G207100 Sobic010G178401--Sobic010G207100 Sobic010G178401--Sobic004G223400 Sobic010G178401--Sobic006G177900 Sobic010G178401--Sobic009G259100 Sobic010G138800 Sobic010G138800 Sobic004G223400--Sobic010G138800 Sobic004G223400--Sobic003G080300 Sobic002G030900 Sobic002G030900 Sobic004G223400--Sobic002G030900 Sobic002G072500 Sobic002G072500 Sobic004G223400--Sobic002G072500 Sobic008G115700 Sobic008G115700 Sobic004G223400--Sobic008G115700 Sobic004G223400--Sobic010G100900 Sobic006G243800 Sobic006G243800 Sobic004G223400--Sobic006G243800 Sobic003G295300 Sobic003G295300 Sobic004G223400--Sobic003G295300 Sobic001G434000 Sobic001G434000 Sobic004G223400--Sobic001G434000 Sobic005G211600--Sobic010G178401 Sobic007G044700 Sobic007G044700 Sobic005G211600--Sobic007G044700 Sobic005G211600--Sobic010G271901 Sobic006G024600 Sobic006G024600 Sobic005G211600--Sobic006G024600 Sobic005G211600--Sobic002G077400 Sobic007G005900 Sobic007G005900 Sobic005G211600--Sobic007G005900 Sobic006G036700 Sobic006G036700 Sobic005G211600--Sobic006G036700 Sobic004G092350 Sobic004G092350 Sobic005G211600--Sobic004G092350 Sobic005G211600--Sobic003G080300 Sobic010G024200 Sobic010G024200 Sobic005G221900--Sobic010G024200 Sobic005G223925 Sobic005G223925 Sobic005G221900--Sobic005G223925 Sobic005G223600 Sobic005G223600 Sobic005G221900--Sobic005G223600 Sobic010G060800 Sobic010G060800 Sobic005G221900--Sobic010G060800 Sobic005G221900--Sobic006G036700 Sobic001G419600 Sobic001G419600 Sobic005G221900--Sobic001G419600 Sobic008G003800 Sobic008G003800 Sobic005G221900--Sobic008G003800 Sobic005G205200 Sobic005G205200 Sobic005G221900--Sobic005G205200 Sobic008G010000 Sobic008G010000 Sobic005G221900--Sobic008G010000 Sobic002G431500 Sobic002G431500 Sobic008G166550--Sobic002G431500 Sobic008G166550--Sobic007G202300 Sobic008G166550--Sobic002G244200 Sobic003G416000 Sobic003G416000 Sobic008G166550--Sobic003G416000 Sobic008G101100 Sobic008G101100 Sobic008G166550--Sobic008G101100 Sobic005G095000 Sobic005G095000 Sobic008G166550--Sobic005G095000 Sobic002G017500 Sobic002G017500 Sobic008G166550--Sobic002G017500 Sobic002G115050 Sobic002G115050 Sobic008G166550--Sobic002G115050 Sobic008G166550--Sobic005G093800
Octagon: transcription factors


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