Gene annotation
Transcriptome id Sobic.008G112500.1
Synonym Sb08g016640
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6PDG2
Pfam PF00023
Panther DB PTHR14493 PTHR14493:SF42
NCBI CDD KOG1595; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G41900 : CCCH-type zinc finger protein with ARM repeat domain
RAP-DB (Rice) LOC_Os12g33090.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a025547 , Zm00025a040709 , Zm00025a054412 , Zm00025a038174 , Zm00025a009869
Brachypodium KQK07846 , KQK07889 , KQJ86556 , KQJ86557 , KQK05294
Barley HORVU1Hr1G014730.1 , HORVU1Hr1G014730.2 , HORVU1Hr1G014730.3 , HORVU1Hr1G014730.4 , HORVU1Hr1G014730.5 , HORVU1Hr1G014730.6 , HORVU5Hr1G027590.2 , HORVU5Hr1G027590.3 , HORVU5Hr1G027590.1 , HORVU5Hr1G027590.6 , HORVU5Hr1G027590.7 , HORVU5Hr1G027590.4 , HORVU5Hr1G027590.5
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G002700 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
2 Sobic.006G176100 expressed protein -
3 Sobic.009G214800 - -
4 Sobic.007G046400 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.003G032800 - -
6 Sobic.010G115900 ureide permease, putative, expressed -
7 Sobic.007G222800 RNA recognition motif family protein, expressed K14398: cleavage and polyadenylation specificity factor subunit 6/7
8 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
9 Sobic.010G185600 phospholipase D, putative, expressed K01115: phospholipase D1/2
10 Sobic.001G312700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@selenium-binding protein-like, putative, expressed -
11 Sobic.002G283800 AIG2-like family domain containing protein, expressed -
12 Sobic.006G248350 - -
13 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
14 Sobic.005G115400 - -
15 Sobic.003G128550 - -
16 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
17 Sobic.006G170200 amino acid kinase, putative, expressed K00930: acetylglutamate kinase
18 Sobic.002G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.004G319000 OsSub22 - Putative Subtilisin homologue, expressed -
20 Sobic.002G046700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@versicolorin reductase, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase


Gene co-expression network
sample Sobic008G112500 Sobic008G112500 Sobic002G002700 Sobic002G002700 Sobic008G112500--Sobic002G002700 Sobic006G176100 Sobic006G176100 Sobic008G112500--Sobic006G176100 Sobic009G214800 Sobic009G214800 Sobic008G112500--Sobic009G214800 Sobic007G046400 Sobic007G046400 Sobic008G112500--Sobic007G046400 Sobic003G032800 Sobic003G032800 Sobic008G112500--Sobic003G032800 Sobic010G115900 Sobic010G115900 Sobic008G112500--Sobic010G115900 Sobic007G222800 Sobic007G222800 Sobic008G112500--Sobic007G222800 Sobic001G280400 Sobic001G280400 Sobic008G112500--Sobic001G280400 Sobic010G185600 Sobic010G185600 Sobic008G112500--Sobic010G185600 Sobic002G002700--Sobic008G112500 Sobic003G008900 Sobic003G008900 Sobic002G002700--Sobic003G008900 Sobic002G002700--Sobic009G214800 Sobic004G327800 Sobic004G327800 Sobic002G002700--Sobic004G327800 Sobic010G080300 Sobic010G080300 Sobic002G002700--Sobic010G080300 Sobic003G122100 Sobic003G122100 Sobic002G002700--Sobic003G122100 Sobic002G333100 Sobic002G333100 Sobic002G002700--Sobic002G333100 Sobic001G006400 Sobic001G006400 Sobic002G002700--Sobic001G006400 Sobic003G128550 Sobic003G128550 Sobic002G002700--Sobic003G128550 Sobic005G184100 Sobic005G184100 Sobic006G176100--Sobic005G184100 Sobic002G046700 Sobic002G046700 Sobic006G176100--Sobic002G046700 Sobic002G283800 Sobic002G283800 Sobic006G176100--Sobic002G283800 Sobic001G516800 Sobic001G516800 Sobic006G176100--Sobic001G516800 Sobic010G136900 Sobic010G136900 Sobic006G176100--Sobic010G136900 Sobic001G161300 Sobic001G161300 Sobic006G176100--Sobic001G161300 Sobic002G334500 Sobic002G334500 Sobic006G176100--Sobic002G334500 Sobic004G033900 Sobic004G033900 Sobic006G176100--Sobic004G033900 Sobic010G171400 Sobic010G171400 Sobic006G176100--Sobic010G171400 Sobic005G115400 Sobic005G115400 Sobic009G214800--Sobic005G115400 Sobic009G214800--Sobic010G115900 Sobic010G143000 Sobic010G143000 Sobic009G214800--Sobic010G143000 Sobic002G321100 Sobic002G321100 Sobic009G214800--Sobic002G321100 Sobic008G120132 Sobic008G120132 Sobic009G214800--Sobic008G120132 Sobic004G197800 Sobic004G197800 Sobic009G214800--Sobic004G197800 Sobic001G467700 Sobic001G467700 Sobic009G214800--Sobic001G467700 Sobic010G168000 Sobic010G168000 Sobic009G214800--Sobic010G168000 Sobic009G070300 Sobic009G070300 Sobic009G214800--Sobic009G070300 Sobic007G046400--Sobic010G171400 Sobic007G046400--Sobic006G176100 Sobic002G199100 Sobic002G199100 Sobic007G046400--Sobic002G199100 Sobic007G046400--Sobic008G112500 Sobic007G046400--Sobic007G222800 Sobic004G270500 Sobic004G270500 Sobic007G046400--Sobic004G270500 Sobic007G046400--Sobic002G046700 Sobic007G162000 Sobic007G162000 Sobic007G046400--Sobic007G162000 Sobic001G253900 Sobic001G253900 Sobic007G046400--Sobic001G253900 Sobic010G258800 Sobic010G258800 Sobic003G032800--Sobic010G258800 Sobic003G032800--Sobic002G046700 Sobic007G022200 Sobic007G022200 Sobic003G032800--Sobic007G022200 Sobic003G008300 Sobic003G008300 Sobic003G032800--Sobic003G008300 Sobic003G032800--Sobic008G112500 Sobic003G032800--Sobic002G199100 Sobic001G171500 Sobic001G171500 Sobic003G032800--Sobic001G171500 Sobic004G172600 Sobic004G172600 Sobic003G032800--Sobic004G172600 Sobic003G381300 Sobic003G381300 Sobic003G032800--Sobic003G381300 Sobic010G115900--Sobic005G115400 Sobic010G115900--Sobic009G214800 Sobic005G128800 Sobic005G128800 Sobic010G115900--Sobic005G128800 Sobic010G115900--Sobic010G143000 Sobic010G115900--Sobic009G070300 Sobic010G115900--Sobic008G120132 Sobic009G107020 Sobic009G107020 Sobic010G115900--Sobic009G107020 Sobic002G337001 Sobic002G337001 Sobic010G115900--Sobic002G337001 Sobic010G115900--Sobic001G467700 Sobic006G080000 Sobic006G080000 Sobic007G222800--Sobic006G080000 Sobic005G033300 Sobic005G033300 Sobic007G222800--Sobic005G033300 Sobic007G096200 Sobic007G096200 Sobic007G222800--Sobic007G096200 Sobic002G140900 Sobic002G140900 Sobic007G222800--Sobic002G140900 Sobic004G134500 Sobic004G134500 Sobic007G222800--Sobic004G134500 Sobic001G199900 Sobic001G199900 Sobic007G222800--Sobic001G199900 Sobic005G164500 Sobic005G164500 Sobic007G222800--Sobic005G164500 Sobic010G171100 Sobic010G171100 Sobic007G222800--Sobic010G171100 Sobic009G105800 Sobic009G105800 Sobic007G222800--Sobic009G105800 Sobic001G280400--Sobic005G164500 Sobic004G117800 Sobic004G117800 Sobic001G280400--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G280400--Sobic008G051100 Sobic005G100900 Sobic005G100900 Sobic001G280400--Sobic005G100900 Sobic001G099800 Sobic001G099800 Sobic001G280400--Sobic001G099800 Sobic003G209400 Sobic003G209400 Sobic001G280400--Sobic003G209400 Sobic004G027000 Sobic004G027000 Sobic001G280400--Sobic004G027000 Sobic004G136500 Sobic004G136500 Sobic001G280400--Sobic004G136500 Sobic001G132900 Sobic001G132900 Sobic001G280400--Sobic001G132900 Sobic005G175300 Sobic005G175300 Sobic010G185600--Sobic005G175300 Sobic001G302400 Sobic001G302400 Sobic010G185600--Sobic001G302400 Sobic006G220200 Sobic006G220200 Sobic010G185600--Sobic006G220200 Sobic010G094800 Sobic010G094800 Sobic010G185600--Sobic010G094800 Sobic003G325500 Sobic003G325500 Sobic010G185600--Sobic003G325500 Sobic001G128100 Sobic001G128100 Sobic010G185600--Sobic001G128100 Sobic003G369500 Sobic003G369500 Sobic010G185600--Sobic003G369500 Sobic001G463400 Sobic001G463400 Sobic010G185600--Sobic001G463400 Sobic004G028000 Sobic004G028000 Sobic010G185600--Sobic004G028000
Octagon: transcription factors


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