Gene annotation
Transcriptome id Sobic.008G125200.2,Sobic.008G125200.3,Sobic.008G125200.4,Sobic.008G125200.1
Synonym Sb08g017740
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lipase class 3 family protein, putative, expressed
UniProt A0A1B6PD76 , A0A1Z5R6T6 , A0A1Z5R773
Pfam PF01764 PF03893 PF01764
Panther DB PTHR21493 PTHR21493:SF147 PTHR21493:SF147 PTHR21493
NCBI CDD KOG2088; Predicted lipase/calmodulin-binding heat-shock protein
KEGG Orthology -
Gene Ontology GO:0016042; lipid catabolic process GO:0006629lipid metabolic process GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT4G16070 : Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3
RAP-DB (Rice) LOC_Os11g43760.1 : lipase class 3 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054311 , Zm00025a025487
Brachypodium KQJ86387 , KQJ86386
Barley HORVU5Hr1G023860.21 , HORVU5Hr1G023860.20 , HORVU5Hr1G023860.23 , HORVU5Hr1G023860.22 , HORVU5Hr1G023860.25 , HORVU5Hr1G023860.24 , HORVU5Hr1G023860.27 , HORVU5Hr1G023860.26 , HORVU5Hr1G023860.29 , HORVU5Hr1G023860.47 , HORVU5Hr1G023860.36 , HORVU5Hr1G023860.37 , HORVU5Hr1G023860.34 , HORVU5Hr1G023860.35 , HORVU5Hr1G023860.32 , HORVU5Hr1G023860.33 , HORVU5Hr1G023860.30 , HORVU5Hr1G023860.31 , HORVU5Hr1G023860.38 , HORVU5Hr1G023860.39 , HORVU5Hr1G023860.43 , HORVU5Hr1G023860.42 , HORVU5Hr1G023860.41 , HORVU5Hr1G023860.40 , HORVU5Hr1G023860.46 , HORVU5Hr1G023860.45 , HORVU5Hr1G023860.44 , HORVU5Hr1G023860.49 , HORVU5Hr1G023860.48 , HORVU5Hr1G023860.6 , HORVU5Hr1G023860.7 , HORVU5Hr1G023860.4 , HORVU5Hr1G023860.5 , HORVU5Hr1G023860.2 , HORVU5Hr1G023860.1 , HORVU5Hr1G023860.8 , HORVU5Hr1G023860.9 , HORVU5Hr1G023860.18 , HORVU5Hr1G023860.19 , HORVU5Hr1G023860.14 , HORVU5Hr1G023860.15 , HORVU5Hr1G023860.16 , HORVU5Hr1G023860.17 , HORVU5Hr1G023860.10 , HORVU5Hr1G023860.11 , HORVU5Hr1G023860.12 , HORVU5Hr1G023860.13
Wheat TraesCS5D02G103100 , TraesCS5D02G103100 , TraesCS5A02G091000 , TraesCS5A02G091000 , TraesCS5B02G097200 , TraesCS5B02G097200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
2 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
3 Sobic.001G387500 disease resistance RPP13-like protein 1, putative, expressed -
4 Sobic.003G071700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G049200 AMP-binding enzyme, putative, expressed -
6 Sobic.009G054100 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.009G179200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
8 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
9 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
10 Sobic.002G131900 expressed protein -
11 Sobic.009G249000 CAMK_CAMK_like.5 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.004G173500 CAMK_CAMK_like.13 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
13 Sobic.007G221100 GRAM and C2 domains containing protein, putative, expressed -
14 Sobic.001G045000 CAMK_CAMK_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
15 Sobic.009G100900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.007G098400 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.001G456100 integral membrane protein, putative, expressed -
18 Sobic.002G114800 CDPK - calcium-dependent protein kinase 18(PubMedID : 31721651)@CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
19 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein


Gene co-expression network
sample Sobic008G125200 Sobic008G125200 Sobic002G242500 Sobic002G242500 Sobic008G125200--Sobic002G242500 Sobic004G145200 Sobic004G145200 Sobic008G125200--Sobic004G145200 Sobic001G387500 Sobic001G387500 Sobic008G125200--Sobic001G387500 Sobic003G071700 Sobic003G071700 Sobic008G125200--Sobic003G071700 Sobic001G049200 Sobic001G049200 Sobic008G125200--Sobic001G049200 Sobic009G054100 Sobic009G054100 Sobic008G125200--Sobic009G054100 Sobic009G179200 Sobic009G179200 Sobic008G125200--Sobic009G179200 Sobic009G127000 Sobic009G127000 Sobic008G125200--Sobic009G127000 Sobic004G173600 Sobic004G173600 Sobic008G125200--Sobic004G173600 Sobic002G294200 Sobic002G294200 Sobic002G242500--Sobic002G294200 Sobic007G098400 Sobic007G098400 Sobic002G242500--Sobic007G098400 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic002G242500--Sobic007G221100 Sobic001G403700 Sobic001G403700 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic010G228000 Sobic010G228000 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic006G076201 Sobic006G076201 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic002G362900 Sobic002G362900 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic001G387500--Sobic009G179200 Sobic004G253900 Sobic004G253900 Sobic001G387500--Sobic004G253900 Sobic001G387500--Sobic008G125200 Sobic002G131900 Sobic002G131900 Sobic001G387500--Sobic002G131900 Sobic010G002400 Sobic010G002400 Sobic001G387500--Sobic010G002400 Sobic001G387500--Sobic004G173600 Sobic001G387500--Sobic001G049200 Sobic001G057200 Sobic001G057200 Sobic001G387500--Sobic001G057200 Sobic010G193900 Sobic010G193900 Sobic001G387500--Sobic010G193900 Sobic002G376300 Sobic002G376300 Sobic003G071700--Sobic002G376300 Sobic006G148200 Sobic006G148200 Sobic003G071700--Sobic006G148200 Sobic001G067900 Sobic001G067900 Sobic003G071700--Sobic001G067900 Sobic003G219500 Sobic003G219500 Sobic003G071700--Sobic003G219500 Sobic003G007500 Sobic003G007500 Sobic003G071700--Sobic003G007500 Sobic004G072800 Sobic004G072800 Sobic003G071700--Sobic004G072800 Sobic001G372000 Sobic001G372000 Sobic003G071700--Sobic001G372000 Sobic001G078800 Sobic001G078800 Sobic003G071700--Sobic001G078800 Sobic006G264500 Sobic006G264500 Sobic003G071700--Sobic006G264500 Sobic001G049200--Sobic009G179200 Sobic002G114800 Sobic002G114800 Sobic001G049200--Sobic002G114800 Sobic010G161450 Sobic010G161450 Sobic001G049200--Sobic010G161450 Sobic001G049200--Sobic002G242500 Sobic001G049200--Sobic007G221100 Sobic001G049200--Sobic002G294200 Sobic004G132300 Sobic004G132300 Sobic001G049200--Sobic004G132300 Sobic006G176600 Sobic006G176600 Sobic001G049200--Sobic006G176600 Sobic001G049200--Sobic007G098400 Sobic010G195500 Sobic010G195500 Sobic009G054100--Sobic010G195500 Sobic007G157900 Sobic007G157900 Sobic009G054100--Sobic007G157900 Sobic010G194100 Sobic010G194100 Sobic009G054100--Sobic010G194100 Sobic008G128900 Sobic008G128900 Sobic009G054100--Sobic008G128900 Sobic009G130100 Sobic009G130100 Sobic009G054100--Sobic009G130100 Sobic002G312900 Sobic002G312900 Sobic009G054100--Sobic002G312900 Sobic003G280400 Sobic003G280400 Sobic009G054100--Sobic003G280400 Sobic004G351500 Sobic004G351500 Sobic009G054100--Sobic004G351500 Sobic002G155500 Sobic002G155500 Sobic009G054100--Sobic002G155500 Sobic009G179200--Sobic001G049200 Sobic009G179200--Sobic002G294200 Sobic009G179200--Sobic001G403700 Sobic003G261400 Sobic003G261400 Sobic009G179200--Sobic003G261400 Sobic009G179200--Sobic002G242500 Sobic004G130900 Sobic004G130900 Sobic009G179200--Sobic004G130900 Sobic007G132700 Sobic007G132700 Sobic009G179200--Sobic007G132700 Sobic009G179200--Sobic001G078800 Sobic009G179200--Sobic010G062800 Sobic001G074200 Sobic001G074200 Sobic009G127000--Sobic001G074200 Sobic009G127000--Sobic004G145200 Sobic009G127000--Sobic010G228000 Sobic009G127000--Sobic007G188100 Sobic009G127000--Sobic010G062800 Sobic009G127000--Sobic001G403700 Sobic001G283500 Sobic001G283500 Sobic009G127000--Sobic001G283500 Sobic007G125900 Sobic007G125900 Sobic009G127000--Sobic007G125900 Sobic002G083266 Sobic002G083266 Sobic009G127000--Sobic002G083266 Sobic004G173600--Sobic002G114800 Sobic004G173600--Sobic010G193900 Sobic004G173600--Sobic001G049200 Sobic004G173600--Sobic010G002400 Sobic002G187300 Sobic002G187300 Sobic004G173600--Sobic002G187300 Sobic003G280300 Sobic003G280300 Sobic004G173600--Sobic003G280300 Sobic004G173600--Sobic006G176600 Sobic001G540100 Sobic001G540100 Sobic004G173600--Sobic001G540100 Sobic004G173600--Sobic004G132300
Octagon: transcription factors


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