Gene annotation
Transcriptome id Sobic.008G127550.3,Sobic.008G127550.1,Sobic.008G127550.2,Sobic.008G127550.5,Sobic.008G127550.4,Sobic.008G127550.7,Sobic.008G127550.6,Sobic.008G127550.8
Synonym -
Functional annotation -
UniProt A0A1Z5R6B0 , A0A1Z5R792 , A0A1Z5R6C2 , A0A1Z5R6V4
Pfam PF13812 PF01535 PF13041 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF760
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G16890 : pentatricopeptide (PPR) domain protein 40
RAP-DB (Rice) LOC_Os12g37100.1 : pentatricopeptide repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a004125
Brachypodium KQJ86343 , KQJ86342
Barley HORVU5Hr1G023140.9 , HORVU5Hr1G023140.8 , HORVU5Hr1G023140.11 , HORVU5Hr1G023140.10 , HORVU5Hr1G023140.13 , HORVU5Hr1G023140.12 , HORVU5Hr1G023140.15 , HORVU5Hr1G023140.14 , HORVU5Hr1G023140.17 , HORVU5Hr1G023140.16 , HORVU5Hr1G023140.18
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G420300 zinc finger protein, putative, expressed -
2 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
3 Sobic.003G226700 kinesin motor domain containing protein, putative, expressed K10393: KIF2_24, kinesin family member 2/24
4 Sobic.006G281400 expressed protein -
5 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
6 Sobic.001G051300 BEE 1, putative, expressed -
7 Sobic.004G243900 E2F family transcription factor protein, putative, expressed -
8 Sobic.007G139500 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
9 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
10 Sobic.003G289800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
11 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
12 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
13 Sobic.009G214100 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
14 Sobic.010G067800 integral membrane transporter family protein, putative, expressed -
15 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
16 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
17 Sobic.006G071628 - -
18 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
19 Sobic.004G321400 BRUSHY 1, putative, expressed -
20 Sobic.004G053900 expressed protein -


Gene co-expression network
sample Sobic008G127550 Sobic008G127550 Sobic003G420300 Sobic003G420300 Sobic008G127550--Sobic003G420300 Sobic002G320600 Sobic002G320600 Sobic008G127550--Sobic002G320600 Sobic003G226700 Sobic003G226700 Sobic008G127550--Sobic003G226700 Sobic006G281400 Sobic006G281400 Sobic008G127550--Sobic006G281400 Sobic003G292700 Sobic003G292700 Sobic008G127550--Sobic003G292700 Sobic001G051300 Sobic001G051300 Sobic008G127550--Sobic001G051300 Sobic004G243900 Sobic004G243900 Sobic008G127550--Sobic004G243900 Sobic007G139500 Sobic007G139500 Sobic008G127550--Sobic007G139500 Sobic009G052100 Sobic009G052100 Sobic008G127550--Sobic009G052100 Sobic003G420300--Sobic003G292700 Sobic003G420300--Sobic003G226700 Sobic008G083500 Sobic008G083500 Sobic003G420300--Sobic008G083500 Sobic010G067600 Sobic010G067600 Sobic003G420300--Sobic010G067600 Sobic003G289800 Sobic003G289800 Sobic003G420300--Sobic003G289800 Sobic004G315700 Sobic004G315700 Sobic003G420300--Sobic004G315700 Sobic003G420300--Sobic002G320600 Sobic007G084200 Sobic007G084200 Sobic003G420300--Sobic007G084200 Sobic003G420300--Sobic009G052100 Sobic003G031700 Sobic003G031700 Sobic002G320600--Sobic003G031700 Sobic001G201000 Sobic001G201000 Sobic002G320600--Sobic001G201000 Sobic002G320600--Sobic003G420300 Sobic002G320600--Sobic003G292700 Sobic010G211800 Sobic010G211800 Sobic002G320600--Sobic010G211800 Sobic002G362700 Sobic002G362700 Sobic002G320600--Sobic002G362700 Sobic002G320600--Sobic003G226700 Sobic002G320600--Sobic008G127550 Sobic004G328300 Sobic004G328300 Sobic002G320600--Sobic004G328300 Sobic003G226700--Sobic007G084200 Sobic003G226700--Sobic003G420300 Sobic003G226700--Sobic003G292700 Sobic001G425700 Sobic001G425700 Sobic003G226700--Sobic001G425700 Sobic003G226700--Sobic003G289800 Sobic009G212100 Sobic009G212100 Sobic003G226700--Sobic009G212100 Sobic001G487200 Sobic001G487200 Sobic003G226700--Sobic001G487200 Sobic003G226700--Sobic004G315700 Sobic003G024000 Sobic003G024000 Sobic003G226700--Sobic003G024000 Sobic002G204400 Sobic002G204400 Sobic006G281400--Sobic002G204400 Sobic003G423600 Sobic003G423600 Sobic006G281400--Sobic003G423600 Sobic008G148000 Sobic008G148000 Sobic006G281400--Sobic008G148000 Sobic005G000500 Sobic005G000500 Sobic006G281400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic006G281400--Sobic001G398400 Sobic010G105400 Sobic010G105400 Sobic006G281400--Sobic010G105400 Sobic003G369200 Sobic003G369200 Sobic006G281400--Sobic003G369200 Sobic005G110535 Sobic005G110535 Sobic006G281400--Sobic005G110535 Sobic004G156200 Sobic004G156200 Sobic006G281400--Sobic004G156200 Sobic003G292700--Sobic003G420300 Sobic003G292700--Sobic003G226700 Sobic009G202801 Sobic009G202801 Sobic003G292700--Sobic009G202801 Sobic001G054700 Sobic001G054700 Sobic003G292700--Sobic001G054700 Sobic006G142500 Sobic006G142500 Sobic003G292700--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic003G292700--Sobic003G032200 Sobic001G377700 Sobic001G377700 Sobic003G292700--Sobic001G377700 Sobic002G021200 Sobic002G021200 Sobic003G292700--Sobic002G021200 Sobic003G292700--Sobic008G083500 Sobic001G051300--Sobic003G289800 Sobic002G383100 Sobic002G383100 Sobic001G051300--Sobic002G383100 Sobic001G051300--Sobic007G139500 Sobic009G087000 Sobic009G087000 Sobic001G051300--Sobic009G087000 Sobic006G071628 Sobic006G071628 Sobic001G051300--Sobic006G071628 Sobic003G179500 Sobic003G179500 Sobic001G051300--Sobic003G179500 Sobic010G147700 Sobic010G147700 Sobic001G051300--Sobic010G147700 Sobic003G017500 Sobic003G017500 Sobic001G051300--Sobic003G017500 Sobic003G201000 Sobic003G201000 Sobic001G051300--Sobic003G201000 Sobic004G243900--Sobic009G087000 Sobic003G183700 Sobic003G183700 Sobic004G243900--Sobic003G183700 Sobic004G243900--Sobic003G179500 Sobic006G051000 Sobic006G051000 Sobic004G243900--Sobic006G051000 Sobic004G243900--Sobic005G110535 Sobic004G243900--Sobic003G292700 Sobic004G243900--Sobic010G147700 Sobic004G243900--Sobic003G289800 Sobic008G129200 Sobic008G129200 Sobic004G243900--Sobic008G129200 Sobic001G196000 Sobic001G196000 Sobic007G139500--Sobic001G196000 Sobic007G139500--Sobic001G051300 Sobic009G206500 Sobic009G206500 Sobic007G139500--Sobic009G206500 Sobic001G437500 Sobic001G437500 Sobic007G139500--Sobic001G437500 Sobic007G139500--Sobic003G179500 Sobic001G103000 Sobic001G103000 Sobic007G139500--Sobic001G103000 Sobic007G139500--Sobic003G017500 Sobic002G191000 Sobic002G191000 Sobic007G139500--Sobic002G191000 Sobic009G214100 Sobic009G214100 Sobic007G139500--Sobic009G214100 Sobic009G052100--Sobic004G315700 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic009G052100--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic009G052100--Sobic003G420300
Octagon: transcription factors


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