Gene annotation
Transcriptome id Sobic.009G012100.1
Synonym ATHCHIB, PR3, B-CHI, HCHIB, PR-3, CHI-B, Sb09g001210
Functional annotation CHIT4 - Chitinase family protein precursor, expressed
UniProt C5YYH5
Pfam PF00187 PF00182
Panther DB PTHR22595 PTHR22595:SF34
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0008061; chitin binding GO:0016998cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT3G12500 : basic chitinase
RAP-DB (Rice) LOC_Os03g30470.1 : CHIT4 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) Zm00025a041699 , Zm00025a041698 , Zm00025a003215 , Zm00025a000465 , Zm00025a000464 , Zm00025a038131
Brachypodium KQK09288
Barley HORVU3Hr1G064470.2 , HORVU3Hr1G064470.3 , HORVU3Hr1G064470.1
Wheat TraesCS3B02G293400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G247550 - -
2 Sobic.001G247550 - -
3 Sobic.001G247550 - -
4 Sobic.008G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@citrate-binding protein precursor, putative, expressed -
5 Sobic.006G246600 DUF538 domain containing protein, putative, expressed -
6 Sobic.002G011700 expressed protein -
7 Sobic.001G272900 avr9/Cf-9 rapidly elicited protein 74, putative, expressed -
8 Sobic.005G205300 expressed protein -
9 Sobic.005G043900 protein kinase domain containing protein, expressed -
10 Sobic.001G190300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@loricrin, putative, expressed -
11 Sobic.008G091614 - -
12 Sobic.004G058300 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
13 Sobic.004G105700 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.001G354400 O-methyltransferase, putative, expressed -
15 Sobic.003G188100 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
16 Sobic.009G023501 - -
17 Sobic.010G126900 lectin-like receptor kinase, putative, expressed -
18 Sobic.004G125500 - -
19 Sobic.008G009200 SAG20, putative, expressed -
20 Sobic.005G043600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'


Gene co-expression network
sample Sobic009G012100 Sobic009G012100 Sobic001G247550 Sobic001G247550 Sobic009G012100--Sobic001G247550 Sobic008G048900 Sobic008G048900 Sobic009G012100--Sobic008G048900 Sobic006G246600 Sobic006G246600 Sobic009G012100--Sobic006G246600 Sobic002G011700 Sobic002G011700 Sobic009G012100--Sobic002G011700 Sobic001G272900 Sobic001G272900 Sobic009G012100--Sobic001G272900 Sobic005G205300 Sobic005G205300 Sobic009G012100--Sobic005G205300 Sobic005G043900 Sobic005G043900 Sobic009G012100--Sobic005G043900 Sobic001G247550--Sobic001G247550 Sobic001G247550--Sobic008G048900 Sobic008G091614 Sobic008G091614 Sobic001G247550--Sobic008G091614 Sobic001G247550--Sobic002G011700 Sobic005G043600 Sobic005G043600 Sobic001G247550--Sobic005G043600 Sobic007G198500 Sobic007G198500 Sobic001G247550--Sobic007G198500 Sobic010G057200 Sobic010G057200 Sobic001G247550--Sobic010G057200 Sobic009G023501 Sobic009G023501 Sobic001G247550--Sobic009G023501 Sobic008G048900--Sobic001G247550 Sobic008G048900--Sobic006G246600 Sobic008G048900--Sobic007G198500 Sobic008G048900--Sobic005G043600 Sobic008G048900--Sobic005G043900 Sobic001G354400 Sobic001G354400 Sobic008G048900--Sobic001G354400 Sobic003G203200 Sobic003G203200 Sobic008G048900--Sobic003G203200 Sobic002G013000 Sobic002G013000 Sobic006G246600--Sobic002G013000 Sobic002G089100 Sobic002G089100 Sobic006G246600--Sobic002G089100 Sobic006G246600--Sobic005G043900 Sobic003G204501 Sobic003G204501 Sobic006G246600--Sobic003G204501 Sobic006G246600--Sobic003G203200 Sobic002G088900 Sobic002G088900 Sobic006G246600--Sobic002G088900 Sobic001G316400 Sobic001G316400 Sobic006G246600--Sobic001G316400 Sobic006G246600--Sobic001G354400 Sobic006G246600--Sobic008G048900 Sobic002G011700--Sobic001G247550 Sobic010G230900 Sobic010G230900 Sobic002G011700--Sobic010G230900 Sobic002G011700--Sobic008G048900 Sobic002G098200 Sobic002G098200 Sobic002G011700--Sobic002G098200 Sobic002G011700--Sobic005G043600 Sobic002G011700--Sobic001G354400 Sobic010G230800 Sobic010G230800 Sobic002G011700--Sobic010G230800 Sobic009G084300 Sobic009G084300 Sobic001G272900--Sobic009G084300 Sobic007G120000 Sobic007G120000 Sobic001G272900--Sobic007G120000 Sobic003G106300 Sobic003G106300 Sobic001G272900--Sobic003G106300 Sobic003G263300 Sobic003G263300 Sobic001G272900--Sobic003G263300 Sobic010G001300 Sobic010G001300 Sobic001G272900--Sobic010G001300 Sobic003G080900 Sobic003G080900 Sobic001G272900--Sobic003G080900 Sobic001G326400 Sobic001G326400 Sobic001G272900--Sobic001G326400 Sobic003G076700 Sobic003G076700 Sobic001G272900--Sobic003G076700 Sobic009G040175 Sobic009G040175 Sobic001G272900--Sobic009G040175 Sobic005G205300--Sobic003G080900 Sobic010G126900 Sobic010G126900 Sobic005G205300--Sobic010G126900 Sobic005G075600 Sobic005G075600 Sobic005G205300--Sobic005G075600 Sobic005G205300--Sobic007G120000 Sobic003G188100 Sobic003G188100 Sobic005G205300--Sobic003G188100 Sobic005G205300--Sobic001G326400 Sobic007G140000 Sobic007G140000 Sobic005G205300--Sobic007G140000 Sobic002G117900 Sobic002G117900 Sobic005G205300--Sobic002G117900 Sobic007G214500 Sobic007G214500 Sobic005G205300--Sobic007G214500 Sobic005G043900--Sobic003G203200 Sobic005G043900--Sobic006G246600 Sobic005G043900--Sobic005G043600 Sobic005G043900--Sobic008G048900 Sobic005G043900--Sobic002G089100 Sobic005G043900--Sobic002G088900 Sobic006G091700 Sobic006G091700 Sobic005G043900--Sobic006G091700 Sobic008G074400 Sobic008G074400 Sobic005G043900--Sobic008G074400 Sobic005G043900--Sobic001G316400
Octagon: transcription factors


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