Gene annotation
Transcriptome id Sobic.004G058300.2
Synonym
Functional annotation haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed
UniProt A0A1Z5RL38
Pfam PF13419
Panther DB PTHR12725 PTHR12725:SF61
NCBI CDD KOG3085; Predicted hydrolase (HAD superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44730 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os02g07730.1 : haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT65992
Barley HORVU6Hr1G031590.14 , HORVU6Hr1G031590.15 , HORVU6Hr1G031590.12 , HORVU6Hr1G031590.13
Wheat TraesCS6A02G155900 , TraesCS6D02G145900 , TraesCS6D02G145900 , TraesCS6B02G184000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G212350 - -
2 Sobic.010G126900 lectin-like receptor kinase, putative, expressed -
3 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
4 Sobic.003G080900 Ser/Thr protein kinase, putative, expressed -
5 Sobic.006G246600 DUF538 domain containing protein, putative, expressed -
6 Sobic.005G043900 protein kinase domain containing protein, expressed -
7 Sobic.002G089100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
8 Sobic.002G013000 DUF538 domain containing protein, putative, expressed -
9 Sobic.003G188100 TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
10 Sobic.005G043600 coatomer subunit beta, putative, expressed K17302: COPB2, coatomer subunit beta'
11 Sobic.007G196300 ubiquitin-associated protein, putative, expressed -
12 Sobic.006G082000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub41 - Putative Subtilisin homologue, expressed -
13 Sobic.008G048900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@citrate-binding protein precursor, putative, expressed -
14 Sobic.005G205300 expressed protein -
15 Sobic.002G088900 DUF538 domain containing protein, putative, expressed -
16 Sobic.003G278000 expressed protein -
17 Sobic.007G034000 expressed protein -
18 Sobic.001G196300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
19 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
20 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase


Gene co-expression network
sample Sobic004G058300 Sobic004G058300 Sobic010G212350 Sobic010G212350 Sobic004G058300--Sobic010G212350 Sobic010G126900 Sobic010G126900 Sobic004G058300--Sobic010G126900 Sobic004G106900 Sobic004G106900 Sobic004G058300--Sobic004G106900 Sobic003G080900 Sobic003G080900 Sobic004G058300--Sobic003G080900 Sobic006G246600 Sobic006G246600 Sobic004G058300--Sobic006G246600 Sobic005G043900 Sobic005G043900 Sobic004G058300--Sobic005G043900 Sobic002G089100 Sobic002G089100 Sobic004G058300--Sobic002G089100 Sobic002G013000 Sobic002G013000 Sobic004G058300--Sobic002G013000 Sobic003G188100 Sobic003G188100 Sobic004G058300--Sobic003G188100 Sobic005G221000 Sobic005G221000 Sobic010G212350--Sobic005G221000 Sobic002G210800 Sobic002G210800 Sobic010G212350--Sobic002G210800 Sobic010G212350--Sobic004G058300 Sobic006G082000 Sobic006G082000 Sobic010G212350--Sobic006G082000 Sobic009G120200 Sobic009G120200 Sobic010G212350--Sobic009G120200 Sobic010G212350--Sobic004G106900 Sobic008G074400 Sobic008G074400 Sobic010G212350--Sobic008G074400 Sobic001G069900 Sobic001G069900 Sobic010G212350--Sobic001G069900 Sobic003G315500 Sobic003G315500 Sobic010G212350--Sobic003G315500 Sobic005G075600 Sobic005G075600 Sobic010G126900--Sobic005G075600 Sobic004G008900 Sobic004G008900 Sobic010G126900--Sobic004G008900 Sobic010G126900--Sobic002G013000 Sobic001G326400 Sobic001G326400 Sobic010G126900--Sobic001G326400 Sobic003G204400 Sobic003G204400 Sobic010G126900--Sobic003G204400 Sobic010G126800 Sobic010G126800 Sobic010G126900--Sobic010G126800 Sobic003G020500 Sobic003G020500 Sobic010G126900--Sobic003G020500 Sobic001G218500 Sobic001G218500 Sobic010G126900--Sobic001G218500 Sobic002G193900 Sobic002G193900 Sobic010G126900--Sobic002G193900 Sobic004G341200 Sobic004G341200 Sobic004G106900--Sobic004G341200 Sobic009G210300 Sobic009G210300 Sobic004G106900--Sobic009G210300 Sobic002G155400 Sobic002G155400 Sobic004G106900--Sobic002G155400 Sobic001G386400 Sobic001G386400 Sobic004G106900--Sobic001G386400 Sobic006G119200 Sobic006G119200 Sobic004G106900--Sobic006G119200 Sobic009G167700 Sobic009G167700 Sobic004G106900--Sobic009G167700 Sobic005G139400 Sobic005G139400 Sobic004G106900--Sobic005G139400 Sobic003G149200 Sobic003G149200 Sobic004G106900--Sobic003G149200 Sobic009G234800 Sobic009G234800 Sobic004G106900--Sobic009G234800 Sobic002G117900 Sobic002G117900 Sobic003G080900--Sobic002G117900 Sobic009G084300 Sobic009G084300 Sobic003G080900--Sobic009G084300 Sobic003G229200 Sobic003G229200 Sobic003G080900--Sobic003G229200 Sobic007G120000 Sobic007G120000 Sobic003G080900--Sobic007G120000 Sobic009G161401 Sobic009G161401 Sobic003G080900--Sobic009G161401 Sobic003G080900--Sobic002G155400 Sobic003G273700 Sobic003G273700 Sobic003G080900--Sobic003G273700 Sobic003G080900--Sobic004G106900 Sobic007G196300 Sobic007G196300 Sobic003G080900--Sobic007G196300 Sobic006G246600--Sobic002G013000 Sobic006G246600--Sobic002G089100 Sobic006G246600--Sobic005G043900 Sobic003G204501 Sobic003G204501 Sobic006G246600--Sobic003G204501 Sobic003G203200 Sobic003G203200 Sobic006G246600--Sobic003G203200 Sobic002G088900 Sobic002G088900 Sobic006G246600--Sobic002G088900 Sobic001G316400 Sobic001G316400 Sobic006G246600--Sobic001G316400 Sobic001G354400 Sobic001G354400 Sobic006G246600--Sobic001G354400 Sobic008G048900 Sobic008G048900 Sobic006G246600--Sobic008G048900 Sobic005G043900--Sobic003G203200 Sobic005G043900--Sobic006G246600 Sobic005G043600 Sobic005G043600 Sobic005G043900--Sobic005G043600 Sobic005G043900--Sobic008G048900 Sobic005G043900--Sobic002G089100 Sobic005G043900--Sobic002G088900 Sobic006G091700 Sobic006G091700 Sobic005G043900--Sobic006G091700 Sobic005G043900--Sobic008G074400 Sobic005G043900--Sobic001G316400 Sobic002G089100--Sobic002G013000 Sobic004G008800 Sobic004G008800 Sobic002G089100--Sobic004G008800 Sobic002G089100--Sobic002G088900 Sobic002G089100--Sobic006G246600 Sobic002G089100--Sobic003G204501 Sobic002G089100--Sobic005G043900 Sobic002G089100--Sobic001G316400 Sobic002G089100--Sobic003G203200 Sobic002G089100--Sobic003G188100 Sobic002G013000--Sobic002G089100 Sobic002G013000--Sobic002G088900 Sobic002G013000--Sobic003G204501 Sobic002G013000--Sobic006G246600 Sobic002G013000--Sobic004G008800 Sobic002G013000--Sobic010G126900 Sobic002G013000--Sobic003G188100 Sobic002G013000--Sobic001G316400 Sobic002G013000--Sobic003G080900 Sobic003G188100--Sobic002G013000 Sobic003G188100--Sobic002G088900 Sobic003G188100--Sobic004G008800 Sobic003G188100--Sobic002G089100 Sobic003G188100--Sobic003G204501 Sobic003G188100--Sobic003G080900 Sobic003G188100--Sobic006G246600 Sobic003G188100--Sobic010G126900 Sobic003G188100--Sobic004G106900
Octagon: transcription factors


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