Gene annotation
| Transcriptome id | Sobic.009G020900.1 |
|---|---|
| Synonym | ATECA4, ECA4, Sb09g001850 |
| Functional annotation | "Ca ATPase, IIB type" (PubMedID : 22196357) calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed |
| UniProt | C5YYZ2 |
| Pfam | PF00690 PF00702 PF00689 PF00122 |
| Panther DB | PTHR24093 PTHR24093:SF358 |
| NCBI CDD | - |
| KEGG Orthology | K01537; P-type Ca2+ transporter type 2C |
| Gene Ontology | GO:0000166; nucleotide binding |
Orthologs (automatic annotation)
| TAIR | AT1G07670 : endomembrane-type CA-ATPase 4 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g17310.1 : calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052719 , Zm00025a001900 , Zm00025a038228 |
| Brachypodium | KQK07779 |
| Barley | HORVU3Hr1G052430.1 , HORVU2Hr1G019830.1 , HORVU5Hr1G117170.1 , HORVU4Hr1G058210.2 , HORVU4Hr1G058210.3 , HORVU4Hr1G058210.1 , HORVU4Hr1G058210.4 , HORVU4Hr1G058210.5 , HORVU1Hr1G007310.2 , HORVU1Hr1G007310.3 , HORVU1Hr1G007310.1 |
| Wheat | TraesCS1A02G047000 , TraesCS1D02G047900 , TraesCS4D02G202200 , TraesCS4D02G202200 , TraesCS4D02G202200 , TraesCS4A02G103000 , TraesCS4A02G103000 , TraesCS1B02G060700 , TraesCS4B02G201500 , TraesCS4B02G201500 , TraesCS4B02G201500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G036800 | WD domain, G-beta repeat domain containing protein, expressed | K10260: FBXW7, F-box and WD-40 domain protein 7 |
| 2 | Sobic.004G269200 | protein kinase, putative, expressed | K18670: dual specificity protein kinase YAK1 |
| 3 | Sobic.010G072800 | exportin-7-A, putative, expressed | K18460: XPO7, exportin-7 |
| 4 | Sobic.001G474700 | expressed protein | - |
| 5 | Sobic.007G047700 | no apical meristem protein, putative, expressed | - |
| 6 | Sobic.001G440600 | expressed protein | - |
| 7 | Sobic.001G127200 | zinc finger family protein, putative, expressed | - |
| 8 | Sobic.006G271200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed | K08342: cysteine protease ATG4 |
| 9 | Sobic.008G123500 | auxilin, putative, expressed | - |
| 10 | Sobic.003G195500 | SEY1, putative, expressed | - |
| 11 | Sobic.001G095500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY121, expressed | - |
| 12 | Sobic.001G413900 | "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 13 | Sobic.004G002400 | expressed protein | - |
| 14 | Sobic.001G415300 | "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed | K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1 |
| 15 | Sobic.001G193000 | STE_PAK_Ste20_STLK.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 16 | Sobic.010G093100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@galactosyltransferase family protein, putative, expressed | K14413: beta-1,3-galactosyltransferase |
| 17 | Sobic.003G246100 | AMSH-like protease, putative, expressed | K11866: STAMBP, STAM-binding protein |
| 18 | Sobic.004G002100 | G-protein alpha subunit, putative, expressed | - |
| 19 | Sobic.001G281100 | START domain containing protein, expressed | - |
| 20 | Sobic.003G005600 | ubiquitin conjugating enzyme protein, putative, expressed | K10581: ubiquitin-conjugating enzyme E2 O |
Gene co-expression network
Octagon: transcription factors
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