Gene annotation
Transcriptome id Sobic.009G031300.1
Synonym Sb09g002630
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide containing protein, putative, expressed
UniProt C5YZH4
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF269
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48810 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g04160.1 : pentatricopeptide containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038155
Brachypodium PNT72018
Barley HORVU1Hr1G016190.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G037000 - -
2 Sobic.002G396900 csAtPR5, putative, expressed -
3 Sobic.010G200800 protein kinase domain containing protein, expressed -
4 Sobic.003G149900 PPR repeat domain containing protein, putative, expressed -
5 Sobic.007G174100 carrier, putative, expressed -
6 Sobic.008G096900 protein of unknown function DUF502 domain containing protein, expressed -
7 Sobic.005G076100 rp3 protein, putative, expressed -
8 Sobic.001G523300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
9 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
10 Sobic.002G326200 TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.009G152901 - -
12 Sobic.004G354800 - -
13 Sobic.008G096150 - -
14 Sobic.002G231800 purine permease, putative, expressed -
15 Sobic.006G058300 expressed protein -
16 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
17 Sobic.003G038300 - -
18 Sobic.002G004100 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
19 Sobic.001G537900 AGAP010609-PA, putative, expressed K17867: DPH4, diphthamide biosynthesis protein 4
20 Sobic.004G016600 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic009G031300 Sobic009G031300 Sobic006G037000 Sobic006G037000 Sobic009G031300--Sobic006G037000 Sobic002G396900 Sobic002G396900 Sobic009G031300--Sobic002G396900 Sobic010G200800 Sobic010G200800 Sobic009G031300--Sobic010G200800 Sobic003G149900 Sobic003G149900 Sobic009G031300--Sobic003G149900 Sobic007G174100 Sobic007G174100 Sobic009G031300--Sobic007G174100 Sobic008G096900 Sobic008G096900 Sobic009G031300--Sobic008G096900 Sobic005G076100 Sobic005G076100 Sobic009G031300--Sobic005G076100 Sobic001G523300 Sobic001G523300 Sobic009G031300--Sobic001G523300 Sobic001G115900 Sobic001G115900 Sobic009G031300--Sobic001G115900 Sobic006G037000--Sobic009G031300 Sobic006G037000--Sobic003G149900 Sobic006G037000--Sobic001G115900 Sobic006G037000--Sobic008G096900 Sobic009G238200 Sobic009G238200 Sobic006G037000--Sobic009G238200 Sobic006G037000--Sobic007G174100 Sobic009G258150 Sobic009G258150 Sobic006G037000--Sobic009G258150 Sobic006G037000--Sobic010G200800 Sobic006G069050 Sobic006G069050 Sobic006G037000--Sobic006G069050 Sobic002G396900--Sobic009G031300 Sobic002G396900--Sobic001G523300 Sobic002G396900--Sobic006G037000 Sobic002G396900--Sobic010G200800 Sobic003G406240 Sobic003G406240 Sobic002G396900--Sobic003G406240 Sobic002G231800 Sobic002G231800 Sobic002G396900--Sobic002G231800 Sobic008G096150 Sobic008G096150 Sobic002G396900--Sobic008G096150 Sobic002G396900--Sobic003G149900 Sobic002G396900--Sobic007G174100 Sobic010G200800--Sobic009G031300 Sobic002G326200 Sobic002G326200 Sobic010G200800--Sobic002G326200 Sobic009G152901 Sobic009G152901 Sobic010G200800--Sobic009G152901 Sobic010G200800--Sobic003G149900 Sobic003G008850 Sobic003G008850 Sobic010G200800--Sobic003G008850 Sobic010G200800--Sobic006G037000 Sobic004G016600 Sobic004G016600 Sobic010G200800--Sobic004G016600 Sobic003G038300 Sobic003G038300 Sobic010G200800--Sobic003G038300 Sobic010G200800--Sobic007G174100 Sobic006G058300 Sobic006G058300 Sobic003G149900--Sobic006G058300 Sobic003G149900--Sobic009G152901 Sobic001G537900 Sobic001G537900 Sobic003G149900--Sobic001G537900 Sobic008G020300 Sobic008G020300 Sobic003G149900--Sobic008G020300 Sobic003G149900--Sobic004G016600 Sobic004G354800 Sobic004G354800 Sobic003G149900--Sobic004G354800 Sobic001G016900 Sobic001G016900 Sobic003G149900--Sobic001G016900 Sobic001G120100 Sobic001G120100 Sobic003G149900--Sobic001G120100 Sobic003G149900--Sobic003G038300 Sobic007G174100--Sobic005G076100 Sobic010G132300 Sobic010G132300 Sobic007G174100--Sobic010G132300 Sobic007G174100--Sobic003G149900 Sobic007G174100--Sobic002G326200 Sobic004G160950 Sobic004G160950 Sobic007G174100--Sobic004G160950 Sobic007G174100--Sobic008G096150 Sobic007G174100--Sobic006G058300 Sobic007G174100--Sobic008G096900 Sobic007G174100--Sobic003G008850 Sobic008G096900--Sobic006G037000 Sobic008G096900--Sobic007G174100 Sobic010G257300 Sobic010G257300 Sobic008G096900--Sobic010G257300 Sobic001G537600 Sobic001G537600 Sobic008G096900--Sobic001G537600 Sobic008G096900--Sobic005G076100 Sobic004G012100 Sobic004G012100 Sobic008G096900--Sobic004G012100 Sobic010G253700 Sobic010G253700 Sobic008G096900--Sobic010G253700 Sobic008G096900--Sobic009G031300 Sobic008G096900--Sobic002G326200 Sobic009G082400 Sobic009G082400 Sobic005G076100--Sobic009G082400 Sobic005G076100--Sobic004G016600 Sobic005G076100--Sobic001G537900 Sobic005G076100--Sobic003G008850 Sobic005G076100--Sobic007G174100 Sobic005G076100--Sobic004G354800 Sobic002G165401 Sobic002G165401 Sobic005G076100--Sobic002G165401 Sobic005G076100--Sobic003G149900 Sobic005G076100--Sobic006G058300 Sobic001G523300--Sobic003G406240 Sobic001G523300--Sobic002G396900 Sobic001G523300--Sobic008G096150 Sobic001G523300--Sobic009G031300 Sobic001G523300--Sobic006G037000 Sobic001G523300--Sobic010G200800 Sobic009G072400 Sobic009G072400 Sobic001G523300--Sobic009G072400 Sobic001G523300--Sobic002G326200 Sobic001G523300--Sobic007G174100 Sobic003G126400 Sobic003G126400 Sobic001G115900--Sobic003G126400 Sobic003G379500 Sobic003G379500 Sobic001G115900--Sobic003G379500 Sobic001G115900--Sobic003G038300 Sobic001G115900--Sobic006G069050 Sobic003G065001 Sobic003G065001 Sobic001G115900--Sobic003G065001 Sobic001G115900--Sobic009G258150 Sobic003G167825 Sobic003G167825 Sobic001G115900--Sobic003G167825 Sobic009G085600 Sobic009G085600 Sobic001G115900--Sobic009G085600 Sobic003G367401 Sobic003G367401 Sobic001G115900--Sobic003G367401
Octagon: transcription factors


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