Gene annotation
Transcriptome id Sobic.001G523300.1
Synonym Sb01g048760
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
heavy metal-associated domain containing protein, expressed
UniProt C5X007
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF131
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52760 : Copper transport protein family
RAP-DB (Rice) LOC_Os10g38870.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000354 , Zm00025a009386
Brachypodium KQJ97568 , KQK23885 , KQK23886
Barley HORVU1Hr1G049420.6 , HORVU1Hr1G049420.7 , HORVU1Hr1G049420.4 , HORVU1Hr1G049420.3 , HORVU1Hr1G049420.1 , HORVU1Hr1G049420.5 , HORVU2Hr1G118200.1 , HORVU2Hr1G118200.2 , HORVU4Hr1G083100.4 , HORVU4Hr1G083100.5 , HORVU4Hr1G083100.3 , HORVU2Hr1G118210.7 , HORVU2Hr1G118210.6 , HORVU2Hr1G118210.5 , HORVU2Hr1G118210.4 , HORVU2Hr1G118210.3 , HORVU2Hr1G118210.2 , HORVU2Hr1G118210.1 , HORVU2Hr1G118210.8
Wheat TraesCS2A02G539600 , TraesCS4D02G316400 , TraesCS4D02G316400 , TraesCS1D02G190700 , TraesCS2D02G540700 , TraesCS2D02G541200 , TraesCS2D02G541200 , TraesCS5A02G492100 , TraesCS2B02G569800 , TraesCS1A02G185700
Populus -


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cDNA sequences
Sobic.001G523300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G406240 - -
2 Sobic.002G396900 csAtPR5, putative, expressed -
3 Sobic.008G096150 - -
4 Sobic.009G031300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide containing protein, putative, expressed -
5 Sobic.006G037000 - -
6 Sobic.010G200800 protein kinase domain containing protein, expressed -
7 Sobic.009G072400 ABC transporter, ATP-binding protein, putative, expressed -
8 Sobic.002G326200 TKL_IRAK_DUF26-la.4 - DUF26 kinases have homology to DUF26 containing loci, expressed -
9 Sobic.007G174100 carrier, putative, expressed -
10 Sobic.010G257300 serine esterase, putative, expressed K15889: prenylcysteine alpha-carboxyl methylesterase
11 Sobic.009G258150 - -
12 Sobic.002G359200 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.008G096900 protein of unknown function DUF502 domain containing protein, expressed -
14 Sobic.003G149900 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G309000 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
16 Sobic.010G060701 - K07964: heparanase
17 Sobic.010G150600 - -
18 Sobic.004G160950 - -
19 Sobic.009G238200 transcription factor(PubMedID : 30367619)@WRKY19, expressed -
20 Sobic.001G115900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G523300 Sobic001G523300 Sobic003G406240 Sobic003G406240 Sobic001G523300--Sobic003G406240 Sobic002G396900 Sobic002G396900 Sobic001G523300--Sobic002G396900 Sobic008G096150 Sobic008G096150 Sobic001G523300--Sobic008G096150 Sobic009G031300 Sobic009G031300 Sobic001G523300--Sobic009G031300 Sobic006G037000 Sobic006G037000 Sobic001G523300--Sobic006G037000 Sobic010G200800 Sobic010G200800 Sobic001G523300--Sobic010G200800 Sobic009G072400 Sobic009G072400 Sobic001G523300--Sobic009G072400 Sobic002G326200 Sobic002G326200 Sobic001G523300--Sobic002G326200 Sobic007G174100 Sobic007G174100 Sobic001G523300--Sobic007G174100 Sobic003G406240--Sobic001G523300 Sobic003G406240--Sobic002G396900 Sobic003G406240--Sobic009G031300 Sobic003G406240--Sobic006G037000 Sobic003G406240--Sobic008G096150 Sobic002G359200 Sobic002G359200 Sobic003G406240--Sobic002G359200 Sobic003G406240--Sobic009G072400 Sobic003G406240--Sobic010G200800 Sobic004G205400 Sobic004G205400 Sobic003G406240--Sobic004G205400 Sobic002G396900--Sobic009G031300 Sobic002G396900--Sobic001G523300 Sobic002G396900--Sobic006G037000 Sobic002G396900--Sobic010G200800 Sobic002G396900--Sobic003G406240 Sobic002G231800 Sobic002G231800 Sobic002G396900--Sobic002G231800 Sobic002G396900--Sobic008G096150 Sobic003G149900 Sobic003G149900 Sobic002G396900--Sobic003G149900 Sobic002G396900--Sobic007G174100 Sobic008G096150--Sobic007G174100 Sobic010G150600 Sobic010G150600 Sobic008G096150--Sobic010G150600 Sobic008G096150--Sobic001G523300 Sobic008G096150--Sobic002G326200 Sobic001G212701 Sobic001G212701 Sobic008G096150--Sobic001G212701 Sobic002G234900 Sobic002G234900 Sobic008G096150--Sobic002G234900 Sobic008G096150--Sobic009G031300 Sobic008G096150--Sobic010G200800 Sobic001G309000 Sobic001G309000 Sobic008G096150--Sobic001G309000 Sobic009G031300--Sobic006G037000 Sobic009G031300--Sobic002G396900 Sobic009G031300--Sobic010G200800 Sobic009G031300--Sobic003G149900 Sobic009G031300--Sobic007G174100 Sobic008G096900 Sobic008G096900 Sobic009G031300--Sobic008G096900 Sobic005G076100 Sobic005G076100 Sobic009G031300--Sobic005G076100 Sobic009G031300--Sobic001G523300 Sobic001G115900 Sobic001G115900 Sobic009G031300--Sobic001G115900 Sobic006G037000--Sobic009G031300 Sobic006G037000--Sobic003G149900 Sobic006G037000--Sobic001G115900 Sobic006G037000--Sobic008G096900 Sobic009G238200 Sobic009G238200 Sobic006G037000--Sobic009G238200 Sobic006G037000--Sobic007G174100 Sobic009G258150 Sobic009G258150 Sobic006G037000--Sobic009G258150 Sobic006G037000--Sobic010G200800 Sobic006G069050 Sobic006G069050 Sobic006G037000--Sobic006G069050 Sobic010G200800--Sobic009G031300 Sobic010G200800--Sobic002G326200 Sobic009G152901 Sobic009G152901 Sobic010G200800--Sobic009G152901 Sobic010G200800--Sobic003G149900 Sobic003G008850 Sobic003G008850 Sobic010G200800--Sobic003G008850 Sobic010G200800--Sobic006G037000 Sobic004G016600 Sobic004G016600 Sobic010G200800--Sobic004G016600 Sobic003G038300 Sobic003G038300 Sobic010G200800--Sobic003G038300 Sobic010G200800--Sobic007G174100 Sobic001G068901 Sobic001G068901 Sobic009G072400--Sobic001G068901 Sobic010G257300 Sobic010G257300 Sobic009G072400--Sobic010G257300 Sobic006G093400 Sobic006G093400 Sobic009G072400--Sobic006G093400 Sobic004G012100 Sobic004G012100 Sobic009G072400--Sobic004G012100 Sobic001G537600 Sobic001G537600 Sobic009G072400--Sobic001G537600 Sobic010G242100 Sobic010G242100 Sobic009G072400--Sobic010G242100 Sobic009G072400--Sobic008G096900 Sobic010G253700 Sobic010G253700 Sobic009G072400--Sobic010G253700 Sobic001G435800 Sobic001G435800 Sobic009G072400--Sobic001G435800 Sobic002G326200--Sobic007G174100 Sobic002G326200--Sobic010G200800 Sobic002G326200--Sobic005G076100 Sobic002G326200--Sobic003G149900 Sobic006G058300 Sobic006G058300 Sobic002G326200--Sobic006G058300 Sobic002G326200--Sobic003G008850 Sobic002G326200--Sobic010G257300 Sobic002G326200--Sobic001G115900 Sobic002G326200--Sobic009G258150 Sobic007G174100--Sobic005G076100 Sobic010G132300 Sobic010G132300 Sobic007G174100--Sobic010G132300 Sobic007G174100--Sobic003G149900 Sobic007G174100--Sobic002G326200 Sobic004G160950 Sobic004G160950 Sobic007G174100--Sobic004G160950 Sobic007G174100--Sobic008G096150 Sobic007G174100--Sobic006G058300 Sobic007G174100--Sobic008G096900 Sobic007G174100--Sobic003G008850
Octagon: transcription factors


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